Access the full text.
Sign up today, get DeepDyve free for 14 days.
Loading next page...
/lp/wiley/the-phase-problem-for-two-dimensional-crystals-ii-simulations-MIRZa7PdE3
References (38)
-
R. Millane (2017)
The phase problem for one-dimensional crystals.Acta crystallographica. Section A, Foundations and advances, 73 Pt 2
-
C. Conrad, S. Basu, Daniel James, Dingjie Wang, Alexander Schaffer, Shatabdi Roy-Chowdhury, N. Zatsepin, A. Aquila, J. Coe, C. Gati, M. Hunter, J. Koglin, Christopher Kupitz, G. Nelson, G. Subramanian, T. White, Yun Zhao, James Zook, S. Boutet, V. Cherezov, J. Spence, R. Fromme, U. Weierstall, P. Fromme (2015)
A novel inert crystal delivery medium for serial femtosecond crystallographyIUCrJ, 2
-
N. Grigorieff, T. Ceska, T. Ceska, K. Downing, K. Downing, J. Baldwin, J. Baldwin, R. Henderson, R. Henderson (1996)
Electron-crystallographic refinement of the structure of bacteriorhodopsin.Journal of molecular biology, 259 3
-
D. Agard, R. Stroud (1982)
Linking regions between helices in bacteriorhodopsin revealed.Biophysical journal, 37 3
-
J. Rodenburg, H. Faulkner (2004)
A phase retrieval algorithm for shifting illuminationApplied Physics Letters, 85
-
B. Gipson, D. Masiel, N. Browning, J. Spence, K. Mitsuoka, H. Stahlberg (2011)
Automatic recovery of missing amplitudes and phases in tilt-limited electron crystallography of two-dimensional crystals.Physical review. E, Statistical, nonlinear, and soft matter physics, 84 1 Pt 1
-
V. Elser (2005)
Reconstruction of an object from its symmetry-averaged diffraction patternarXiv: Data Analysis, Statistics and Probability
-
J. Spence, U. Weierstall, T. Fricke, R. Glaeser, K. Downing (2003)
Three-dimensional diffractive imaging for crystalline monolayers with one-dimensional compact support.Journal of structural biology, 144 1-2
-
R. Stroud, D. Agard (1979)
Structure determination of asymmetric membrane profiles using an iterative Fourier method.Biophysical journal, 25 3
-
J. Frank (2006)
Three-Dimensional Electron Microscopy of Macromolecular Assemblies -
G. Oszlányi, A. Sütő (2008)
The charge flipping algorithm.Acta crystallographica. Section A, Foundations of crystallography, 64 Pt 1
-
R. Bates (1984)
Uniqueness of solutions to two-dimensional fourier phase problems for localized and positive imagesComput. Vis. Graph. Image Process., 25
-
J. Fienup (1982)
Phase retrieval algorithms: a comparison.Applied optics, 21 15
-
R. Millane, R. Arnal (2015)
Uniqueness of the macromolecular crystallographic phase problem.Acta crystallographica. Section A, Foundations and advances, 71 Pt 6
-
S. Marchesini (2006)
Invited article: a [corrected] unified evaluation of iterative projection algorithms for phase retrieval.The Review of scientific instruments, 78 1
-
R. Arnal, R. Millane (2017)
The phase problem for two-dimensional crystals. I. Theory.Acta crystallographica. Section A, Foundations and advances, 73 Pt 6
-
B. Pedrini, Ching-Ju Tsai, G. Capitani, C. Padeste, M. Hunter, N. Zatsepin, A. Barty, W. Benner, S. Boutet, G. Feld, S. Hau-Riege, R. Kirian, Christopher Kupitz, Marc Messerschmitt, John Ogren, T. Pardini, B. Segelke, Garth Williams, J. Spence, R. Abela, M. Coleman, James Evans, G. Schertler, M. Frank, Xiao-Dan Li (2014)
7 Å resolution in protein two-dimensional-crystal X-ray diffraction at Linac Coherent Light SourcePhilosophical Transactions of the Royal Society B: Biological Sciences, 369
-
Agard (1982)
10.1016/S0006-3495(21)00378-7Biophys. J., 37
-
R. Millane, V. Lo (2013)
Iterative projection algorithms in protein crystallography. I. TheoryActa Crystallographica Section A, 69
-
Elser (2008)
10.1107/S0108767307050684Acta Cryst. A, 64
-
Hongxing He, W. Su (2015)
Direct phasing of protein crystals with high solvent content.Acta crystallographica. Section A, Foundations and advances, 71 Pt 1
-
K. Murata, K. Mitsuoka, T. Hirai, T. Walz, Peter Agrek, J. Heymann, A. Engel, Y. Fujiyoshi, M Mu (2000)
Structural determinants of water permeation through aquaporin-1Nature, 407
-
G. Ren, V. Reddy, A. Cheng, P. Melnyk, A. Mitra (2001)
Visualization of a water-selective pore by electron crystallography in vitreous ice.Proceedings of the National Academy of Sciences of the United States of America, 98 4
-
S. Boutet, L. Lomb, Garth Williams, T. Barends, A. Aquila, R. Doak, U. Weierstall, D. DePonte, J. Steinbrener, R. Shoeman, M. Messerschmidt, A. Barty, T. White, S. Kassemeyer, R. Kirian, M. Seibert, P. Montanez, C. Kenney, R. Herbst, P. Hart, J. Pines, G. Haller, S. Gruner, H. Philipp, M. Tate, M. Hromalik, L. Koerner, N. Bakel, J. Morse, W. Ghonsalves, David Arnlund, M. Bogan, C. Caleman, R. Fromme, C. Hampton, M. Hunter, L. Johansson, G. Katona, Christopher Kupitz, M. Liang, Andrew Martin, K. Nass, L. Redecke, F. Stellato, N. Tîmneanu, Dingjie Wang, N. Zatsepin, D. Schafer, J. Defever, R. Neutze, P. Fromme, J. Spence, H. Chapman, I. Schlichting (2012)
High-Resolution Protein Structure Determination by Serial Femtosecond CrystallographyScience, 337
-
M. Frank, D. Carlson, M. Hunter, Garth Williams, M. Messerschmidt, N. Zatsepin, A. Barty, W. Benner, Kaiqin Chu, A. Graf, S. Hau-Riege, R. Kirian, C. Padeste, T. Pardini, B. Pedrini, B. Segelke, M. Seibert, J. Spence, Ching-Ju Tsai, S. Lane, Xiao-Dan Li, G. Schertler, S. Boutet, M. Coleman, James Evans (2014)
Femtosecond X-ray diffraction from two-dimensional protein crystalsIucrj, 1
-
C. Kewish, P. Thibault, O. Bunk, F. Pfeiffer (2010)
The potential for two-dimensional crystallography of membrane proteins at future x-ray free-electron laser sourcesNew Journal of Physics, 12
-
R. Millane (1990)
Phase retrieval in crystallography and opticsJournal of The Optical Society of America A-optics Image Science and Vision, 7
-
S. Marchesini (2006)
A unified evaluation of iterative projection algorithms for phase retrieval -
P. Frederix, P. Bosshart, A. Engel (2009)
Atomic force microscopy of biological membranes.Biophysical journal, 96 2
-
V. Lunin, L. Natalia, Lunina, Tatiana Petrova, T. Skovoroda, Alexandre Urzhumtsevb, Alberto Podjarnyc (2000)
Low-resolution ab initio phasing: problems and advances.Acta crystallographica. Section D, Biological crystallography, 56 Pt 10
-
C. Gati, D. Oberthuer, O. Yefanov, R. Bunker, F. Stellato, E. Chiu, S. Yeh, A. Aquila, S. Basu, R. Bean, K. Beyerlein, S. Botha, S. Boutet, D. DePonte, R. Doak, R. Fromme, L. Galli, I. Grotjohann, Daniel James, Christopher Kupitz, L. Lomb, M. Messerschmidt, K. Nass, Kimberly Rendek, R. Shoeman, Dingjie Wang, U. Weierstall, T. White, Garth Williams, N. Zatsepin, P. Fromme, J. Spence, K. Goldie, J. Jehle, P. Metcalf, A. Barty, H. Chapman (2017)
Atomic structure of granulin determined from native nanocrystalline granulovirus using an X-ray free-electron laserProceedings of the National Academy of Sciences, 114
-
G. Ren, A. Cheng, V. Reddy, P. Melnyk, A. Mitra (2000)
Three-dimensional fold of the human AQP1 water channel determined at 4 A resolution by electron crystallography of two-dimensional crystals embedded in ice.Journal of molecular biology, 301 2
-
(1984)
Comput -
S. Marchesini, H. He, H. Chapman, S. Noy, M. Howells, U. Weierstall, J. Laboratory, C. Livermore, Usa Laboratory, CA Berkeley, Usa University, D. Physics, Az Tempe, Usa (2003)
X-ray image reconstruction from a diffraction pattern alonePhysical Review B, 68
-
V. Elser (2001)
Phase retrieval by iterated projections.Journal of the Optical Society of America. A, Optics, image science, and vision, 20 1
-
W. Kühlbrandt, D. Wang, Y. Fujiyoshi (1994)
Atomic model of plant light-harvesting complex by electron crystallographyNature, 367
-
C. Casadei, Ching-Ju Tsai, A. Barty, M. Hunter, N. Zatsepin, C. Padeste, G. Capitani, W. Benner, S. Boutet, S. Hau-Riege, Christopher Kupitz, M. Messerschmidt, John Ogren, T. Pardini, K. Rothschild, L. Sala, B. Segelke, Garth Williams, James Evans, Xiao-Dan Li, M. Coleman, B. Pedrini, M. Frank (2018)
Resolution extension by image summing in serial femtosecond crystallography of two-dimensional membrane-protein crystalsIUCrJ, 5
-
R. Dods, P. Båth, David Arnlund, K. Beyerlein, G. Nelson, Mengling Liang, Rajiv Harimoorthy, P. Berntsen, Erik Malmerberg, L. Johansson, R. Andersson, R. Bosman, S. Carbajo, Elin Claesson, C. Conrad, Peter Dahl, Greger Hammarin, M. Hunter, Chufeng Li, Stella Lisova, D. Milathianaki, Joseph Robinson, C. Safari, Amit Sharma, Garth Williams, Cecilia Wickstrand, O. Yefanov, J. Davidsson, D. DePonte, A. Barty, G. Brändén, R. Neutze (2017)
From Macrocrystals to Microcrystals: A Strategy for Membrane Protein Serial Crystallography.Structure, 25 9
- Publisher
- Wiley
- Copyright
- Copyright © 2018 Wiley Subscription Services, Inc., A Wiley Company
- ISSN
- 0108-7673
- eISSN
- 1600-5724
- DOI
- 10.1107/S2053273318008707
- pmid
- 30182940
- Publisher site
- See Article on Publisher Site
Abstract
Phasing of diffraction data from two‐dimensional crystals using only minimal molecular envelope information is investigated by simulation. Two‐dimensional crystals are an attractive target for studying membrane proteins using X‐ray free‐electron lasers, particularly for dynamic studies at room temperature. Simulations using an iterative projection algorithm show that phasing is feasible with fairly minimal molecular envelope information, supporting recent uniqueness results for this problem [Arnal & Millane (2017). Acta Cryst. A73, 438–448]. The effects of noise and likely requirements for structure determination using X‐ray free‐electron laser sources are investigated.
Journal
Acta Crystallographica Section A Foundations of Crystallography – Wiley
Published: Sep 1, 2018
Keywords: ; ; ; ; ; ;