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A. Leslie (1999)
Integration of macromolecular diffraction data.Acta crystallographica. Section D, Biological crystallography, 55 Pt 10
Ram Seshadri (2004)
Crystal structures
A. Stern, A. Naworyta, J. Cazzulo, S. Mowbray (2011)
Structures of type B ribose 5‐phosphate isomerase from Trypanosoma cruzi shed light on the determinants of sugar specificity in the structural familyThe FEBS Journal, 278
C. Nichols, S. Sainsbury, Jingshan Ren, T. Walter, Anil Verma, D. Stammers, N. Saunders, R. Owens (2009)
The structure of NMB1585, a MarR-family regulator from Neisseria meningitidisActa Crystallographica Section F: Structural Biology and Crystallization Communications, 65
P. Evans
Biological Crystallography Scaling and Assessment of Data Quality
Junho Jung, Jin-Kwang Kim, Soo-Jin Yeom, Y. Ahn, D. Oh, L. Kang (2011)
Crystal structure of Clostridium thermocellum ribose-5-phosphate isomerase B reveals properties critical for fast enzyme kineticsApplied Microbiology and Biotechnology, 90
Zepu Zhang, N. Sauter, H. Bedem, G. Snell, A. Deacon (2006)
Automated diffraction image analysis and spot searching for high-throughput crystal screeningJournal of Applied Crystallography, 39
J. O'callaghan, L. Buttó, John Macsharry, K. Nally, P. O’Toole (2012)
Influence of Adhesion and Bacteriocin Production by Lactobacillus salivarius on the Intestinal Epithelial Cell Transcriptional ResponseApplied and Environmental Microbiology, 78
(2012)
Acta Cryst
Rong-guang Zhang, C. Andersson, A. Savchenko, T. Skarina, E. Evdokimova, S. Beasley, C. Arrowsmith, A. Edwards, A. Joachimiak, S. Mowbray (2003)
Structure of Escherichia coli ribose-5-phosphate isomerase: a ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle.Structure, 11 1
Jimin Pei, Bong-Hyun Kim, N. Grishin (2008)
PROMALS3D: a tool for multiple protein sequence and structure alignmentsNucleic Acids Research, 36
R. Bingel-Erlenmeyer, V. Olieric, J. Grimshaw, José Gabadinho, X. Wang, S. Ebner, A. Isenegger, R. Schneider, Jörg Schneider, W. Glettig, C. Pradervand, E. Panepucci, T. Tomizaki, Meitian Wang, C. Schulze-Briese (2011)
SLS Crystallization Platform at Beamline X06DA—A Fully Automated Pipeline Enabling in Situ X-ray Diffraction ScreeningCrystal Growth & Design, 11
S. Corr, Yin Li, C. Riedel, P. O’Toole, C. Hill, C. Gahan (2007)
Bacteriocin production as a mechanism for the antiinfective activity of Lactobacillus salivarius UCC118Proceedings of the National Academy of Sciences, 104
L. Bird (2011)
High throughput construction and small scale expression screening of multi-tag vectors in Escherichia coli.Methods, 55 1
Tae Kim, T. Kwon, K. Min, M. Dong, Young Park, C. Ban (2009)
Crystal structures of substrate and inhibitor complexes of ribose 5-phosphate isomerase A from Vibrio vulnificus YJ016Molecules and Cells, 27
E. Krissinel, K. Henrick (2007)
Inference of macromolecular assemblies from crystalline state.Journal of molecular biology, 372 3
K. Ishikawa, I. Matsui, F. Payan, C. Cambillau, H. Ishida, Y. Kawarabayasi, H. Kikuchi, A. Roussel (2002)
A hyperthermostable D-ribose-5-phosphate isomerase from Pyrococcus horikoshii characterization and three-dimensional structure.Structure, 10 6
H. Berman, K. Henrick, Haruki Nakamura (2003)
Announcing the worldwide Protein Data BankNature Structural Biology, 10
L. Jacquamet, J. Ohana, J. Joly, F. Borel, M. Pirocchi, P. Charrault, A. Bertoni, P. Israel-Gouy, P. Carpentier, F. Kozielski, D. Blot, J. Ferrer (2004)
Automated analysis of vapor diffusion crystallization drops with an X-ray beam.Structure, 12 7
F. Gorrec (2009)
The MORPHEUS protein crystallization screenJournal of Applied Crystallography, 42
D. Hargreaves (2011)
A manual low-cost protein-crystallization plate jig for in situ diffraction in the home laboratoryJournal of Applied Crystallography, 45
(2004)
Coot: model-building tools for molecular graphics.
R. Strange, S. Antonyuk, J. Mark, Ellis, Y. Bessho, S. Kuramitsu, Shigeyuki, Yokoyamac, S. Samar, Hasnaina (2009)
The structure of an archaeal ribose-5-phosphate isomerase from Methanocaldococcus jannaschii (MJ1603).Acta crystallographica. Section F, Structural biology and crystallization communications, 65 Pt 12
A. Roos, C. Andersson, T. Bergfors, M. Jacobsson, A. Karlén, T. Unge, T. Jones, S. Mowbray (2004)
Mycobacterium tuberculosis ribose-5-phosphate isomerase has a known fold, but a novel active site.Journal of molecular biology, 335 3
Berman (2000)
235Nucleic Acids Res., 28
G. Winter (2010)
xia2: an expert system for macromolecular crystallography data reductionJournal of Applied Crystallography, 43
H. Berman, Tammy Battistuz, T. Bhat, Wolfgang Bluhm, Philip Bourne, K. Burkhardt, Zukang Feng, G. Gilliland, L. Iype, Shri Jain, Phoebe Fagan, Jessica Marvin, David Padilla, V. Ravichandran, B. Schneider, N. Thanki, H. Weissig, J. Westbrook, C. Zardecki
Electronic Reprint Biological Crystallography the Protein Data Bank Biological Crystallography the Protein Data Bank
M. Graille, Philippe Meyer, N. Leulliot, Isabelle Sorel, Joël Janin, H. Tilbeurgh, S. Quevillon-Cheruel (2005)
Crystal structure of the S. cerevisiae D-ribose-5-phosphate isomerase: comparison with the archaeal and bacterial enzymes.Biochimie, 87 8
W. Pearson, D. Lipman (1988)
Improved tools for biological sequence comparison.Proceedings of the National Academy of Sciences of the United States of America, 85 8
(2007)
Nucleic Acids Res
J. Ohana, L. Jacquamet, J. Joly, A. Bertoni, P. Taunier, L. Michel, P. Charrault, M. Pirocchi, P. Carpentier, F. Borel, R. Kahn, J. Ferrer (2004)
CATS: a Cryogenic Automated Transfer System installed on the beamline FIP at ESRFJournal of Applied Crystallography, 37
Qingping Xu, R. Schwarzenbacher, D. Mcmullan, F. Delft, L. Brinen, J. Cànaves, X. Dai, A. Deacon, M. Elsliger, S. Eshagi, R. Floyd, A. Godzik, C. Grittini, Slawomir Grzechnik, L. Jaroszewski, Cathy Karlak, H. Klock, Eric Koesema, John Kovarik, A. Kreusch, P. Kuhn, S. Lesley, I. Levin, T. McPhillips, Mitchell Miller, Andrew Morse, K. Moy, J. Ouyang, R. Page, Kevin Quijano, A. Robb, G. Spraggon, R. Stevens, H. Bedem, Jeff Velasquez, J. Vincent, Xianhong Wang, B. West, Guenter Wolf, K. Hodgson, J. Wooley, I. Wilson (2004)
Crystal structure of a ribose‐5‐phosphate isomerase RpiB (TM1080) from Thermotoga maritima at 1.90 Å resolutionProteins: Structure, 56
F. Studier (2005)
Protein production by auto-induction in high density shaking cultures.Protein expression and purification, 41 1
A. Maire, M. Gelin, S. Pochet, F. Hoh, M. Pirocchi, J. Guichou, J. Ferrer, G. Labesse (2011)
In-plate protein crystallization, in situ ligand soaking and X-ray diffraction.Acta crystallographica. Section D, Biological crystallography, 67 Pt 9
D. Axford, R. Owen, J. Aishima, J. Foadi, A. Morgan, James Robinson, J. Nettleship, R. Owens, I. Moraes, E. Fry, J. Grimes, K. Harlos, A. Kotecha, Jingshan Ren, G. Sutton, T. Walter, D. Stuart, G. Evans (2012)
In situ macromolecular crystallography using microbeamsActa Crystallographica Section D: Biological Crystallography, 68
T. Walter, J. Diprose, Chris Mayo, C. Siebold, Mike Pickford, Lester Carter, Geoffrey Sutton, Nick Berrow, James Brown, I. Berry, Guillaume Stewart-Jones, J. Grimes, D. Stammers, R. Esnouf, E. Jones, Ray Owens, David Stuart, K. Harlos (2005)
A procedure for setting up high‐throughput nanolitre crystallization experiments. Crystallization workflow for initial screening, automated storage, imaging and optimizationActa Crystallographica Section D: Biological Crystallography, 61
Xiangxi Wang, Wei Peng, Jingshan Ren, Zhong-yu Hu, Jiwei Xu, Z. Lou, Xumei Li, W. Yin, Xinliang Shen, C. Porta, T. Walter, G. Evans, D. Axford, R. Owen, D. Rowlands, Junzhi Wang, D. Stuart, E. Fry, Z. Rao (2012)
A sensor-adaptor mechanism for enterovirus uncoating from structures of EV71Nature structural & molecular biology, 19
A. Roos, Emmanuel Burgos, D. Ericsson, L. Salmon, S. Mowbray (2005)
Competitive Inhibitors of Mycobacterium tuberculosis Ribose-5-phosphate Isomerase B Reveal New Information about the Reaction Mechanism*Journal of Biological Chemistry, 280
N. Berrow, D. Alderton, S. Sainsbury, J. Nettleship, R. Assenberg, Nahid Rahman, D. Stuart, R. Owens (2007)
A versatile ligation-independent cloning method suitable for high-throughput expression screening applicationsNucleic Acids Research, 35
M. Holmes, F. Buckner, W. Voorhis, C. Verlinde, C. Mehlin, E. Boni, G. DeTitta, J. Luft, Angela Lauricella, Lori Anderson, O. Kalyuzhniy, F. Zucker, L. Schoenfeld, T. Earnest, W. Hol, E. Merritt (2006)
Structure of ribose 5-phosphate isomerase from Plasmodium falciparum.Acta crystallographica. Section F, Structural biology and crystallization communications, 62 Pt 5
A. Murzin, S. Brenner, T. Hubbard, C. Chothia (1995)
SCOP: a structural classification of proteins database for the investigation of sequences and structures.Journal of molecular biology, 247 4
Vincent Chen, W. Arendall, J. Headd, D. Keedy, R. Immormino, G. Kapral, L. Murray, Jane Richardson, David Richardson (2009)
MolProbity: all-atom structure validation for macromolecular crystallographyActa Crystallographica Section D: Biological Crystallography, 66
E. Rangarajan, J. Sivaraman, A. Matte, M. Cygler (2002)
Crystal structure of D‐ribose‐5‐phosphate isomerase (RpiA) from Escherichia coliProteins: Structure, 48
N. Sauter, R. Grosse-Kunstleve, P. Adams (2004)
Robust indexing for automatic data collectionJournal of Applied Crystallography, 37
Rong-guang Zhang, C. Andersson, T. Skarina, E. Evdokimova, A. Edwards, A. Joachimiak, A. Savchenko, S. Mowbray (2003)
The 2.2 A resolution structure of RpiB/AlsB from Escherichia coli illustrates a new approach to the ribose-5-phosphate isomerase reaction.Journal of molecular biology, 332 5
A. Vagin, A. Teplyakov (2010)
Molecular replacement with MOLREP.Acta crystallographica. Section D, Biological crystallography, 66 Pt 1
(2005)
Biochimie, 87, 763–769
Guillaume Evrard, G. Langer, A. Perrakis, V. Lamzin (2006)
Assessment of automatic ligand building in ARP/wARPActa Crystallographica Section D: Biological Crystallography, 63
K. Hamada, H. Ago, M. Sugahara, Y. Nodake, S. Kuramitsu, M. Miyano (2003)
Oxyanion Hole-stabilized Stereospecific Isomerization in Ribose-5-phosphate Isomerase (Rpi)*Journal of Biological Chemistry, 278
R. Keegan, M. Winn (2007)
Automated search-model discovery and preparation for structure solution by molecular replacement.Acta crystallographica. Section D, Biological crystallography, 63 Pt 4
L. Jacquamet, J. Joly, A. Bertoni, P. Charrault, M. Pirocchi, X. Vernède, F. Bouis, F. Borel, J. Périn, T. Denis, J. Rechatin, J. Ferrer (2009)
Upgrade of the CATS sample changer on FIP-BM30A at the ESRF: towards a commercialized standard.Journal of synchrotron radiation, 16 Pt 1
B. Neville, P. O’Toole (2010)
Probiotic properties of Lactobacillus salivarius and closely related Lactobacillus species.Future microbiology, 5 5
N. Stein (2008)
CHAINSAW: a program for mutating pdb files used as templates in molecular replacementJournal of Applied Crystallography, 41
The structure of ribose 5‐phosphate isomerase from the probiotic bacterium Lactobacillus salivarius UCC188 has been determined at 1.72 Å resolution. The structure was solved by molecular replacement, which identified the functional homodimer in the asymmetric unit. Despite only showing 57% sequence identity to its closest homologue, the structure adopted the typical α and β D‐ribose 5‐phosphate isomerase fold. Comparison to other related structures revealed high homology in the active site, allowing a model of the substrate‐bound protein to be proposed. The determination of the structure was expedited by the use of in situ crystallization‐plate screening on beamline I04‐1 at Diamond Light Source to identify well diffracting protein crystals prior to routine cryocrystallography.
Acta Crystallographica Section F – Wiley
Published: Dec 1, 2012
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