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L. Melderen, M. Thi, P. Lecchi, S. Gottesman, M. Couturier, M. Maurizi (1996)
ATP-dependent Degradation of CcdA by Lon ProteaseThe Journal of Biological Chemistry, 271
M. Maté, R. Vincentelli, N. Foos, D. Raoult, C. Cambillau, M. Ortíz-Lombardía (2011)
Crystal structure of the DNA-bound VapBC2 antitoxin/toxin pair from Rickettsia felisNucleic Acids Research, 40
D. Pandey, K. Gerdes (2005)
Toxin–antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotesNucleic Acids Research, 33
J. Hurley, N. Woychik (2009)
Bacterial Toxin HigB Associates with Ribosomes and Mediates Translation-dependent mRNA Cleavage at A-rich Sites*The Journal of Biological Chemistry, 284
A. Meinhart, J. Alonso, N. Sträter, W. Saenger (2003)
Crystal structure of the plasmid maintenance system ɛ/ζ: Functional mechanism of toxin ζ and inactivation by ɛ2ζ2 complex formationProceedings of the National Academy of Sciences of the United States of America, 100
Kabsch (2010)
125Acta Cryst. D, 66
R. Leplae, Damien Geeraerts, Régis Hallez, Julien Guglielmini, P. Dreze, L. Melderen (2011)
Diversity of bacterial type II toxin–antitoxin systems: a comprehensive search and functional analysis of novel familiesNucleic Acids Research, 39
Y. Yamaguchi, Jung-Ho Park, M. Inouye (2009)
MqsR, a Crucial Regulator for Quorum Sensing and Biofilm Formation, Is a GCU-specific mRNA Interferase in Escherichia coli*The Journal of Biological Chemistry, 284
K. Kamada, F. Hanaoka, S. Burley (2003)
Crystal structure of the MazE/MazF complex: molecular bases of antidote-toxin recognition.Molecular cell, 11 4
S. Khoo, B. Loll, W. Chan, R. Shoeman, Lena Ngoo, C. Yeo, A. Meinhart (2007)
Molecular and Structural Characterization of the PezAT Chromosomal Toxin-Antitoxin System of the Human Pathogen Streptococcus pneumoniae*Journal of Biological Chemistry, 282
H. Takagi, Y. Kakuta, T. Okada, M. Yao, I. Tanaka, M. Kimura (2005)
Crystal structure of archaeal toxin-antitoxin RelE–RelB complex with implications for toxin activity and antitoxin effectsNature Structural &Molecular Biology, 12
Y. Yamaguchi, Jung-Ho Park, M. Inouye (2011)
Toxin-antitoxin systems in bacteria and archaea.Annual review of genetics, 45
M. Schumacher, K. Piro, Weijun Xu, Sonja Hansen, K. Lewis, R. Brennan (2009)
Molecular Mechanisms of HipA-Mediated Multidrug Tolerance and Its Neutralization by HipBScience, 323
Guang-yao Li, Yonglong Zhang, M. Inouye, M. Ikura (2008)
Structural mechanism of transcriptional autorepression of the Escherichia coli RelB/RelE antitoxin/toxin module.Journal of molecular biology, 380 1
P. Konarev, M. Petoukhov, V. Volkov, D. Svergun (2006)
ATSAS 2.1, a program package for small‐angle scattering data analysisJournal of Applied Crystallography, 39
Mikkel Christensen-Dalsgaard, M. Jørgensen, K. Gerdes (2009)
Three new RelE-homologous mRNA interferases of Escherichia coli differentially induced by environmental stressesMolecular Microbiology, 75
A. Barrios, Rongjun Zuo, Y. Hashimoto, Li Yang, W. Bentley, T. Wood (2006)
Autoinducer 2 Controls Biofilm Formation in Escherichia coli through a Novel Motility Quorum-Sensing Regulator (MqsR, B3022)Journal of Bacteriology, 188
Mikkel Christensen-Dalsgaard, K. Gerdes (2006)
Two higBA loci in the Vibrio cholerae superintegron encode mRNA cleaving enzymes and can stabilize plasmidsMolecular Microbiology, 62
K. Gerdes, S. Christensen, A. Løbner‐Olesen (2005)
Prokaryotic toxin–antitoxin stress response lociNature Reviews Microbiology, 3
Kevin Dalton, S. Crosson (2010)
A conserved mode of protein recognition and binding in a ParD-ParE toxin-antitoxin complex.Biochemistry, 49 10
A. Garcia-Pino, Mikkel Christensen-Dalsgaard, L. Wyns, M. Yarmolinsky, R. Magnuson, K. Gerdes, R. Loris (2008)
Doc of Prophage P1 Is Inhibited by Its Antitoxin Partner Phd through Fold Complementation*♦Journal of Biological Chemistry, 283
Guang-yao Li, Yonglong Zhang, M. Inouye, M. Ikura (2009)
Inhibitory Mechanism of Escherichia coli RelE-RelB Toxin-Antitoxin Module Involves a Helix Displacement Near an mRNA Interferase Active Site*Journal of Biological Chemistry, 284
M. Oberer, K. Zangger, K. Gruber, W. Keller (2007)
The solution structure of ParD, the antidote of the ParDE toxin–antitoxin module, provides the structural basis for DNA and toxin bindingProtein Science, 16
Xiaojing Yang, Keith Moffat (1996)
Insights into specificity of cleavage and mechanism of cell entry from the crystal structure of the highly specific Aspergillus ribotoxin, restrictocin.Structure, 4 7
T. Madl, L. Melderen, Natacha Mine, M. Respondek, M. Oberer, W. Keller, Leila Khatai, K. Zangger (2006)
Structural basis for nucleic acid and toxin recognition of the bacterial antitoxin CcdA.Journal of molecular biology, 364 2
Q. Tian, M. Ohnishi, A. Tabuchi, Y. Terawaki (1996)
A new plasmid-encoded proteic killer gene system: cloning, sequencing, and analyzing hig locus of plasmid Rts1.Biochemical and biophysical research communications, 220 2
Makarova (2009)
19Biol. Direct, 4
Natalie Jonge, A. Garcia-Pino, L. Buts, Sarah Haesaerts, D. Charlier, K. Zangger, L. Wyns, H. Greve, R. Loris (2009)
Rejuvenation of CcdB-poisoned gyrase by an intrinsically disordered protein domain.Molecular cell, 35 2
P. Budde, B. Davis, Jie Yuan, M. Waldor (2006)
Characterization of a higBA Toxin-Antitoxin Locus in Vibrio choleraeJournal of Bacteriology, 189
(2011)
Nucleic Acids Res
A. Garcia-Pino, Sreeram Balasubramanian, L. Wyns, E. Gazit, H. Greve, R. Magnuson, D. Charlier, N. Nuland, R. Loris (2010)
Allostery and Intrinsic Disorder Mediate Transcription Regulation by Conditional CooperativityCell, 142
Etienne Maisonneuve, Lana Shakespeare, M. Jørgensen, K. Gerdes (2011)
Bacterial persistence by RNA endonucleasesProceedings of the National Academy of Sciences, 108
S. Gill, Von Hippel (1989)
Calculation of protein extinction coefficients from amino acid sequence data.Analytical biochemistry, 182 2
B. Matthews (1968)
Solvent content of protein crystals.Journal of molecular biology, 33 2
H. Lehnherr, M. Yarmolinsky (1995)
Addiction protein Phd of plasmid prophage P1 is a substrate of the ClpXP serine protease of Escherichia coli.Proceedings of the National Academy of Sciences of the United States of America, 92
(2009)
Science, 323, 396–401
K. Kamada, F. Hanaoka (2005)
Conformational change in the catalytic site of the ribonuclease YoeB toxin by YefM antitoxin.Molecular cell, 19 4
A. Camacho, R. Misselwitz, J. Behlke, S. Ayora, K. Welfle, A. Meinhart, B. Lara, W. Saenger, H. Welfle, J.C. Alons (2002)
In vitro and in vivo Stability of the 2ζ2 Protein Complex of the Broad Host-Range Streptococcus pyogenes pSM19035 Addiction System, 383
M. Jørgensen, D. Pandey, Milena Jaskólska, K. Gerdes (2008)
HicA of Escherichia coli Defines a Novel Family of Translation-Independent mRNA Interferases in Bacteria and ArchaeaJournal of Bacteriology, 191
H. Fischer, M. Neto, H. Napolitano, I. Polikarpov, A. Craievich (2010)
Determination of the molecular weight of proteins in solution from a single small-angle X-ray scattering measurement on a relative scaleJournal of Applied Crystallography, 43
I. Drobnak, Natalie Jonge, Sarah Haesaerts, G. Vesnaver, R. Loris, J. Lah (2013)
Energetic basis of uncoupling folding from binding for an intrinsically disordered protein.Journal of the American Chemical Society, 135 4
K. Kantardjieff, B. Rupp (2003)
Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein–nucleic acid complex crystalsProtein Science, 12
R. Loris, Irina Marianovsky, J. Lah, T. Laeremans, H. Engelberg-Kulka, G. Glaser, S. Muyldermans, L. Wyns (2003)
Crystal Structure of the Intrinsically Flexible Addiction Antidote MazE*Journal of Biological Chemistry, 278
A. Guinier (1939)
La diffraction des rayons X aux très petits angles : application à l'étude de phénomènes ultramicroscopiquesAnnales De Physique, 11
Vivek Anantharaman, L. Aravind (2003)
New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay systemGenome Biology, 4
Villu Kasari, Kristiina Kurg, T. Margus, T. Tenson, N. Kaldalu (2010)
The Escherichia coli mqsR and ygiT Genes Encode a New Toxin-Antitoxin PairJournal of Bacteriology, 192
J. Heidelberg, Jonathan Eisen, William Nelson, R. Clayton, M. Gwinn, R. Dodson, D. Haft, E. Hickey, J. Peterson, L. Umayam, Steven Gill, Karen Nelson, Timothy Read, Hervé Tettelin, D. Richardson, M. Ermolaeva, J. Vamathevan, Steven Bass, Haiying Qin, Ioana Dragoi, P. Sellers, L. McDonald, T. Utterback, Robert Fleishmann, W. Nierman, O. White, S. Salzberg, Hamilton Smith, Rita Colwell, J. Mekalanos, J. Venter, C. Fraser (2000)
DNA sequence of both chromosomes of the cholera pathogen Vibrio choleraeNature, 406
Breann Brown, Simina Grigoriu, Younghoon Kim, J. Arruda, Andrew Davenport, T. Wood, W. Peti, R. Page (2009)
Three Dimensional Structure of the MqsR:MqsA Complex: A Novel TA Pair Comprised of a Toxin Homologous to RelE and an Antitoxin with Unique PropertiesPLoS Pathogens, 5
G. David, J. Pérez (2009)
Combined sampler robot and high-performance liquid chromatography: a fully automated system for biological small-angle X-ray scattering experiments at the Synchrotron SOLEIL SWING beamlineJournal of Applied Crystallography, 42
Da-Peng Wang, Hao-Lei Wan, Song Zhang, Jun Yu (2009)
γ-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution ratesBiology Direct, 4
L. Buts, J. Lah, M. Dao‐Thi, L. Wyns, R. Loris (2005)
Toxin-antitoxin modules as bacterial metabolic stress managers.Trends in biochemical sciences, 30 12
M. Winn, C. Ballard, K. Cowtan, E. Dodson, P. Emsley, P. Evans, R. Keegan, E. Krissinel, A. Leslie, A. Mccoy, S. McNicholas, G. Murshudov, N. Pannu, E. Potterton, H. Powell, R. Read, A. Vagin, K. Wilson (2011)
Overview of the CCP4 suite and current developmentsActa Crystallographica Section D: Biological Crystallography, 67
E. Sevin, F. Barloy-Hubler (2007)
RASTA-Bacteria: a web-based tool for identifying toxin-antitoxin loci in prokaryotesGenome Biology, 8
Iris Keren, Devang Shah, A. Spoering, N. Kaldalu, K. Lewis (2004)
Specialized Persister Cells and the Mechanism of Multidrug Tolerance in Escherichia coliJournal of Bacteriology, 186
K. Gerdes, P. Rasmussen, S. Molin (1986)
Unique type of plasmid maintenance function: postsegregational killing of plasmid-free cells.Proceedings of the National Academy of Sciences of the United States of America, 83 10
Arti Tripathi, P. Dewan, Bipasha Barua, R. Varadarajan (2012)
Additional role for the ccd operon of F-plasmid as a transmissible persistence factorProceedings of the National Academy of Sciences, 109
Y. Mauguen, R. Hartley, E. Dodson, G. Dodson, G. Bricogne, C. Chothia, A. Jack (1982)
Molecular structure of a new family of ribonucleasesNature, 297
Kirsten Mattison, J. Wilbur, M. So, Richard Brennan, Richard Brennan (2006)
Structure of FitAB from Neisseria gonorrhoeae Bound to DNA Reveals a Tetramer of Toxin-Antitoxin Heterodimers Containing Pin Domains and Ribbon-Helix-Helix Motifs*Journal of Biological Chemistry, 281
A. Boggild, N. Sofos, K. Andersen, A. Feddersen, A. Easter, L. Passmore, D. Brodersen (2012)
The Crystal Structure of the Intact E. coli RelBE Toxin-Antitoxin Complex Provides the Structural Basis for Conditional CooperativityStructure(London, England:1993), 20
M. Arbing, S. Handelman, A. Kuzin, G. Verdon, Chi Wang, M. Su, Francesca Rothenbacher, M. Abashidze, Mohan Liu, J. Hurley, R. Xiao, T. Acton, M. Inouye, G. Montelione, N. Woychik, J. Hunt (2010)
Crystal structures of Phd-Doc, HigA, and YeeU establish multiple evolutionary links between microbial growth-regulating toxin-antitoxin systems.Structure, 18 8
U. Heinemann, W. Saenger (1982)
Specific protein-nucleic acid recognition in ribonuclease T1–2′-guanylic acid complex: an X-ray studyNature, 299
The genome of Vibrio cholerae encodes two higBA toxin–antitoxin (TA) modules that are activated by amino‐acid starvation. Here, the TA complex of the second module, higBA2, as well as the C‐terminal domain of the corresponding HigA2 antitoxin, have been purified and crystallized. The HigBA2 complex crystallized in two crystal forms. Crystals of form I belonged to space group P21212, with unit‐cell parameters a = 129.0, b = 119.8, c = 33.4 Å, and diffracted to 3.0 Å resolution. The asymmetric unit is likely to contain a single complex consisting of two toxin monomers and one antitoxin dimer. The second crystal form crystallized in space group P3221, with unit‐cell parameters a = 134.5, c = 55.4 Å. These crystals diffracted to 2.2 Å resolution and probably contain a complex with a different stoichiometry. Crystals of the C‐terminal domain of HigA2 belonged to space group C2, with unit‐cell parameters a = 115.4, b = 61.2, c = 73.8 Å, β = 106.7°, and diffracted to 1.8 Å resolution.
Acta Crystallographica Section F – Wiley
Published: Sep 1, 2013
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