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E Heegaard, V Vandvik (2004)
Climate change affects the outcome of competitive interactions? An application of principal response curvesOecologia, 139
S Fuentes, E Nood, S Tims, I Heikamp-de Jong, CJF Braak, JJ Keller, EG Zoetendal, WM Vos (2014)
Reset of a critically disturbed microbial ecosystem: faecal transplant in recurrent Clostridium difficile infectionISME J, 8
R Andersen, L Grasset, MN Thormann, L Rochefort, AJ Francez (2010)
Changes in microbial community structure and function following Sphagnum peatland restorationSoil Biol Biochem, 42
JR Bray, JT Curtis (1957)
An ordination of the upland forest communities of Southern WisconsinEcol Monogr, 27
PG Cardoso, D Raffaelli, AI Lillebø, T Verdelhos, MA Pardal (2008)
The impact of extreme flooding events and anthropogenic stressors on the macrobenthic communities’ dynamicsEstuar Coast Shelf Sci, 76
PJ Brink, CJF Braak (1998)
Multivariate analysis of stress in experimental ecosystems by principal response curves and similarity analysisAquat Ecol, 32
RCM Verdonschot, AM Oosten-Siedlecka, CJF Braak, PFM Verdonschot (2015)
Macroinvertebrate survival during cessation of flow and streambed drying in a lowland streamFreshw Biol, 60
PJ Brink, Wijngaarden RP Van, WG Lucassen, TC Brock, P Leeuwangh (1996)
Effects of the insecticide Dursban 4E (active ingredient chlorpyrifos) in outdoor experimental ditches: II. Invertebrate community responses and recoveryEnviron Toxicol Chem, 15
RJ Pakeman (2004)
Consistency of plant species and trait responses to grazing along a productivity gradient: a multi-site analysisJ Ecol, 92
AJ Britton, JM Fisher (2007)
Interactive effects of nitrogen deposition, fire and grazing on diversity and composition of low-alpine prostrate Calluna vulgaris heathlandJ Appl Ecol, 44
F Kohler, F Gillet, Gobat Jm, A Buttler, F Kohler, F Gillet, Gobat Jm (2006)
Effect of cattle activities on gap colonization in Mountain PasturesFolia Geobot, 41
P Smilauer, J Lepš (2014)
Multivariate analysis of ecological data using CANOCO 5
T Moser, J Römbke, HJ Schallnass, CaM Gestel (2007)
The use of the multivariate principal response curve (PRC) for community level analysis: a case study on the effects of carbendazim on enchytraeids in terrestrial model ecosystems (TME)Ecotoxicology, 16
ME Timmerman, CJ Braak (2008)
Bootstrap confidence intervals for principal response curvesComput Stat Data Anal, 52
EM Hartgers, GH Aalderink, PJ Brink, R Gylstra, JWF Wiegman, TCM Brock (1998)
Ecotoxicological threshold levels of a mixture of herbicides (atrazine, diuron and metolachlor) in freshwater microcosmsAquat Ecol, 32
S Duarte, C Pascoal, A Alves, A Correia, F Cássio (2008)
Copper and zinc mixtures induce shifts in microbial communities and reduce leaf litter decomposition in streamsFreshw Biol, 53
René P. A. van Wijngaarden, Paul J. van den Brink, Steven J. H. Crum, Theo C. M. Brock, Peter Leeuwangh, Oude Jan H. Voshaar (1996)
Effects of the insecticide dursban® 4E (active ingredient chlorpyrifos) in outdoor experimental ditches: I. Comparison of short-term toxicity between the laboratory and the fieldEnvironmental Toxicology and Chemistry, 15
JG Cuppen, PJ Brink, E Camps, KF Uil, TC Brock (2000)
Impact of the fungicide carbendazim in freshwater microcosms. I. Water quality, breakdown of particulate organic matter and responses of macroinvertebratesAquat Toxicol, 48
I Roessink, SJH Crum, F Bransen, E Leeuwen, F Kerkum, AA Koelmans, TCM Brock (2006)
Impact of triphenyltin acetate in microcosms simulating floodplain lakes. I. Influence of sediment qualityEcotoxicology, 15
PJ Brink, CJF Braak (1999)
Principal response curves: analysis of time-dependent multivariate responses of biological community to stressEnviron Toxicol Chem, 18
PT Davies, MKS Tso (1982)
Procedures for reduced-rank regressionAppl Stat, 31
BW Matthews (1975)
Comparison of the predicted and observed secondary structure of T4 phage lysozymeBiochim Biophys Acta Protein Struct, 405
AK Smilde, ME Timmerman, MMWB Hendriks, JJ Jansen, HCJ Hoefsloot (2012)
Generic framework for high-dimensional fixed-effects ANOVABrief Bioinform, 13
Principal response curves analysis (PRC) is widely applied to experimental multivariate longitudinal data for the study of time-dependent treatment effects on the multiple outcomes or response variables (RVs). Often, not all of the RVs included in such a study are affected by the treatment and RV-selection can be used to identify those RVs and so give a better estimate of the principal response. We propose four backward selection approaches, based on permutation testing, that differ in whether coefficient size is used or not in ranking the RVs. These methods are expected to give a more robust result than the use of a straightforward cut-off value for coefficient size. Performance of all methods is demonstrated in a simulation study using realistic data. The permutation testing approach that uses information on coefficient size of RVs speeds up the algorithm without affecting its performance. This most successful permutation testing approach removes roughly 95 % of the RVs that are unaffected by the treatment irrespective of the characteristics of the data set and, in the simulations, correctly identifies up to 97 % of RVs affected by the treatment.
Aquatic Ecology – Springer Journals
Published: Oct 15, 2016
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