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Yang Shen, F. Delaglio, Gabriel Cornilescu, A. Bax (2009)
TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shiftsJournal of Biomolecular NMR, 44
H. Kuroyanagi, Tetsuo Kobayashi, S. Mitani, M. Hagiwara (2006)
Transgenic alternative-splicing reporters reveal tissue-specific expression profiles and regulation mechanisms in vivoNature Methods, 3
S. Goodman, C. Branda, M. Robinson, R. Burdine, M. Stern (2003)
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The RNA-binding protein SUP-12 controls muscle-specific splicing of the ADF/cofilin pre-mRNA in C. elegansThe Journal of Cell Biology, 167
F. Delaglio, S. Grzesiek, G. Vuister, G. Zhu, John Pfeifer, A. Bax (1995)
NMRPipe: A multidimensional spectral processing system based on UNIX pipesJournal of Biomolecular NMR, 6
H. Kuroyanagi, Genta Ohno, S. Mitani, M. Hagiwara (2007)
The Fox-1 Family and SUP-12 Coordinately Regulate Tissue-Specific Alternative Splicing In VivoMolecular and Cellular Biology, 27
The splicing factor SUP-12 from Caenorhabditis elegans binds to regulatory RNA elements in pre-mRNA in order to generate tissue-specific alternative splicing for genes such as the fibroblast growth factor receptor egl-15. In nematode muscle cells, SUP-12 promotes the use of a mutually exclusive exon to impart variant binding specificity to the EGL-15 extracellular protein domain. Here we report the side chain and backbone 1H, 13C and 15N chemical shift assignments for the bacterially expressed RNA recognition motif domain from SUP-12, both in isolation as well as bound to a short RNA derived from the intron sequence between exon 4 and exon 5B of egl-15. Comparison of protein chemical shift values for both the backbone and side chain nuclei, coupled with secondary chemical shift analysis, reveal initial details of the RNA recognition.
Biomolecular NMR Assignments – Springer Journals
Published: Jan 20, 2013
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