Access the full text.
Sign up today, get DeepDyve free for 14 days.
B. Stich, H. Maurer, A. Melchinger, M. Frisch, M. Heckenberger, J. Voort, J. Peleman, A. Sørensen, J. Reif (2006)
Comparison of Linkage Disequilibrium in Elite European Maize Inbred Lines using AFLP and SSR MarkersMolecular Breeding, 17
Diego Cortés, K. Reilly, E. Okogbenin, J. Beeching, C. Iglesias, J. Tohme (2002)
Mapping wound-response genes involved in post-harvest physiological deterioration (PPD) of cassava (Manihot esculenta Crantz)Euphytica, 128
C. Egesi, F. Ogbe, M. Akoroda, P. Ilona, A. Dixon (2007)
Resistance profile of improved cassava germplasm to cassava mosaic disease in NigeriaEuphytica, 155
C. Gebhardt, J. Valkonen (2001)
Organization of genes controlling disease resistance in the potato genome.Annual review of phytopathology, 39
A. Boonchanawiwat, S. Sraphet, O. Boonseng, D. Lightfoot, K. Triwitayakorn (2011)
QTL underlying plant and first branch height in cassava ( Manihot esculenta Crantz)Fuel and Energy Abstracts
P Marmey, J Beeching, S Hamon, A Charrier (1993)
Evaluation of cassava (Manihot esculenta Crantz.) germplasm using RAPD markersEuphytica, 74
Y. Utsumi, Tetsuya Sakurai, Yoshimi Umemura, S. Ayling, M. Ishitani, J. Narangajavana, Punchapat Sojikul, K. Triwitayakorn, M. Matsui, Ri-ichiroh Manabe, K. Shinozaki, M. Seki (2012)
RIKEN Cassava Initiative: Establishment of a Cassava Functional Genomics PlatformTropical Plant Biology, 5
(2008)
Assessment of the diversity in global cassava genetic resources based on simple sequence repeat (SSR) markers
I. Hippolyte, F. Bakry, M. Séguin, L. Gardès, R. Rivallan, A. Risterucci, C. Jenny, X. Perrier, F. Carreel, X. Argout, P. Piffanelli, I. Khan, Robert Miller, G. Pappas, D. Mbeguie-A-Mbeguie, T. Matsumoto, Veronique Bernardinis, E. Huttner, A. Kilian, F. Baurens, A. D'Hont, F. Côte, B. Courtois, J. Glaszmann (2010)
A saturated SSR/DArT linkage map of Musa acuminata addressing genome rearrangements among bananasBMC Plant Biology, 10
Véronique Jorge, M. Fregene, C. Vélez, M. Duque, Joe Tohme, Valérie Verdier (2001)
QTL analysis of field resistance to Xanthomonas axonopodis pv. manihotis in cassavaTheoretical and Applied Genetics, 102
Y Jia, Z Wang, P Singh (2002)
Development of dominant rice balst Pi-ta ressitance gene markersCrop Sci, 42
TM Crosbie, SR Eathington, GR Johnson, M Edwards, R Reiter, S Stark, RG Mohanty, M Oyervides, RE Buchler, AK Walker, R Dodert, X Delannay, JC Pershing, MA Hall, KR Lamkey (2006)
Plant breeding: the Arnel R. Hallauer International Symposium
E Okogbenin, J Marin, M Fregene (2008)
QTL analysis for early yield in a pseudo F2 population of cassavaAfr J Biotechnol, 7
K. Olsen (2004)
SNPs, SSRs and inferences on cassava’s originPlant Molecular Biology, 56
H. Kulembeka (2010)
Genetic linkage mapping of field resistance to cassava brown streak disease in cassava (Manihot esculenta Crantz) landraces from Tanzania
J. Ribaut, J. Betrán (1999)
Single large-scale marker-assisted selection (SLS-MAS)Molecular Breeding, 5
S. Sraphet, A. Boonchanawiwat, T. Thanyasiriwat, O. Boonseng, S. Tabata, S. Sasamoto, K. Shirasawa, S. Isobe, D. Lightfoot, S. Tangphatsornruang, K. Triwitayakorn (2011)
SSR and EST-SSR-based genetic linkage map of cassava (Manihot esculenta Crantz)Theoretical and Applied Genetics, 122
M. Elias, O. Panaud, T. Robert (2000)
Assessment of genetic variability in a traditional cassava (Manihot esculenta Crantz) farming system, using AFLP markersHeredity, 85
Elizabeth Kizito, A. Rönnberg-Wästljung, T. Egwang, U. Gullberg, M. Fregene, A. Westerbergh (2007)
Quantitative trait loci controlling cyanogenic glucoside and dry matter content in cassava (Manihot esculenta Crantz) roots.Hereditas, 144 4
T. Komori, Toshio Yamamoto, Naoki Takemori, Masakazu Kashihara, Hideko Matsushima, N. Nitta (2004)
Fine genetic mapping of the nuclear gene, Rf-1, that restores the BT-type cytoplasmic male sterility in rice (Oryza sativa L.) by PCR-based markersEuphytica, 129
Yulin Jia, Zhonghua Wang, Pratibha Singh (2002)
Development of Dominant Rice Blast Pi‐ta Resistance Gene MarkersCrop Science
E. Lander, D. Botstein (1989)
Mapping mendelian factors underlying quantitative traits using RFLP linkage maps.Genetics, 121 1
J. Qiu, A. Schürch, N. Yahiaoui, Lingli Dong, Huajie Fan, Zhongjuan Zhang, B. Keller, H. Ling (2007)
Physical mapping and identification of a candidate for the leaf rust resistance gene Lr1 of wheatTheoretical and Applied Genetics, 115
M. Fregene, Adriana Bernal, M. Duque, A. Dixon, Joe Tohme (2000)
AFLP analysis of African cassava (Manihot esculenta Crantz) germplasm resistant to the cassava mosaic disease (CMD)Theoretical and Applied Genetics, 100
W. Sanseverino, G. Roma, M. Simone, L. Faino, S. Melito, E. Stupka, L. Frusciante, M. Ercolano (2009)
PRGdb: a bioinformatics platform for plant resistance gene analysisNucleic Acids Research, 38
C Egesi, F Ogbe, M Akoroda, P Ilona, A Dixon (2007)
Resistance profile of improved cassava germplasm to cassava mosaic diseaseEuphytica, 155
C. López, Benoît Piégu, Richard Cooke, M. Delseny, J. Tohme, Valérie Verdier (2005)
Using cDNA and genomic sequences as tools to develop SNP strategies in cassava (Manihot esculenta Crantz)Theoretical and Applied Genetics, 110
Elly Speulman, David Bouchez, E. Holub, Jim Beynon (1998)
Disease resistance gene homologs correlate with disease resistance loci of Arabidopsis thaliana.The Plant journal : for cell and molecular biology, 14 4
A. Zacarias, Anna-Maria Botha, M. Labuschagne, I. Benesi (2004)
Characterization and genetic distance analysis of cassava (Manihot esculenta Crantz) germplasm from Mozambique using RAPD fingerprintingEuphytica, 138
P. Chavarriaga-Aguirre, M. Maya, M. Bonierbale, Stephen Kresovich, M. Fregene, J. Tohme, G. Kochert (1998)
Microsatellites in Cassava (Manihot esculenta Crantz): discovery, inheritance and variabilityTheoretical and Applied Genetics, 97
M Ragot, M Lee (2007)
Marker-assisted selection in maize: current status, potential limitation and perspectives from the private and public sectors. Marker assisted selection: current status and future perspectives in crops, livestock, forestry and fish
S. Whankaew, Supannee Poopear, S. Kanjanawattanawong, S. Tangphatsornruang, O. Boonseng, D. Lightfoot, K. Triwitayakorn (2011)
A genome scan for quantitative trait loci affecting cyanogenic potential of cassava root in an outbred populationBMC Genomics, 12
EL Heffner, ME Sorrells, J-L Jannink (2011)
Genomic selection for crop improvementCrop Sci, 49
A. Rafalski (2002)
Applications of single nucleotide polymorphisms in crop genetics.Current opinion in plant biology, 5 2
A. Syvänen (2001)
Accessing genetic variation: genotyping single nucleotide polymorphismsNature Reviews Genetics, 2
R. Varshney, A. Graner, M. Sorrells (2005)
Genic microsatellite markers in plants: features and applications.Trends in biotechnology, 23 1
S. Carter, L. Fresco, P. Jones (1992)
An atlas of cassava in Africa: historical, agroecological and demographic aspects of crop distribution.
J. Holland (2007)
Genetic architecture of complex traits in plants.Current opinion in plant biology, 10 2
C. Linden, Doret Wouters, V. Mihálka, E. Kochieva, M. Smulders, B. Vosman (2004)
Efficient targeting of plant disease resistance loci using NBS profilingTheoretical and Applied Genetics, 109
C. López, L. Quesada-Ocampo, Adriana Bohórquez, M. Duque, J. Vargas, J. Tohme, V. Verdier (2007)
Mapping EST-derived SSRs and ESTs involved in resistance to bacterial blight in Manihot esculenta.Genome, 50 12
J. Ribaut, D. Poland (2000)
Molecular approaches for the genetic improvement of cereals for stable production in water-limited environments
A. Akano, A. Dixon, C. Mba, E. Barrera, M. Fregene (2002)
Genetic mapping of a dominant gene conferring resistance to cassava mosaic diseaseTheoretical and Applied Genetics, 105
Xin Chen, Zhiqiang Xia, Yuhua Fu, Cheng Lu, Wenquan Wang (2010)
Constructing a Genetic Linkage Map Using an F1 Population of Non-inbred Parents in Cassava (Manihot esculenta Crantz)Plant Molecular Biology Reporter, 28
Jianming Yu, E. Buckler (2006)
Genetic association mapping and genome organization of maize.Current opinion in biotechnology, 17 2
M. Ragot, M. Lee, É. Guimarães, J. Ruane, B. Scherf, A. Sonnino, J. Dargie (2007)
Marker-assisted selection in maize: current status, potential, limitations and perspectives from the private and public sectors.
C. Hackett, F. Wachira, S. Paul, W. Powell, R. Waugh (2000)
Construction of a genetic linkage map for Camellia sinensis (tea)Heredity, 85
S. Flint-Garcia, Jeffry Thornsberry, E. Buckler (2003)
Structure of linkage disequilibrium in plants.Annual review of plant biology, 54
A. Roa, M. Maya, M. Duque, J. Tohme, A. Allem, M. Bonierbale (1997)
AFLP analysis of relationships among cassava and other Manihot speciesTheoretical and Applied Genetics, 95
J Marín Colorado, H Ramírez, M Fregene (2009)
Genetic mapping and QTL analysis for carotene in an S1 population of cassavaActa Agron, Universidad Nacionale de Colombia, 58
Jun Yang, D. An, Peng Zhang (2011)
Expression profiling of cassava storage roots reveals an active process of glycolysis/gluconeogenesis.Journal of integrative plant biology, 53 3
D. Tautz, M. Trick, G. Dover (1986)
Cryptic simplicity in DNA is a major source of genetic variationNature, 322
Shengqiang Zhong, J. Dekkers, R. Fernando, J. Jannink (2009)
Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case StudyGenetics, 182
C. Gebhardt, Diana Bellin, Heike Henselewski, W. Lehmann, J. Schwarzfischer, J. Valkonen, J. Valkonen (2006)
Marker-assisted combination of major genes for pathogen resistance in potatoTheoretical and Applied Genetics, 112
R. Mba, P. Stephenson, K. Edwards, S. Melzer, J. Nkumbira, U. Gullberg, K. Apel, M. Gale, J. Tohme, M. Fregene (2001)
Simple sequence repeat (SSR) markers survey of the cassava (Manihot esculenta Crantz) genome: towards an SSR-based molecular genetic map of cassavaTheoretical and Applied Genetics, 102
D. Habier, R. Fernando, J. Dekkers (2007)
The Impact of Genetic Relationship Information on Genome-Assisted Breeding ValuesGenetics, 177
S. Tangphatsornruang, S. Sraphet, R. Singh, E. Okogbenin, E. Okogbenin, M. Fregene, K. Triwitayakorn (2008)
Development of polymorphic markers from expressed sequence tags of Manihot esculenta CrantzMolecular Ecology Resources, 8
S. Ahn, S. Tanksley (1993)
Comparative linkage maps of the rice and maize genomes.Proceedings of the National Academy of Sciences of the United States of America, 90 17
R. Kawuki (2009)
Variation in cassava (Manihot esculenta Crantz) based on single nucleotide polymorphisms, simple sequence repeats and phenotypic traits
W. Lawson, C. Jan, T. Shatte, L. Smith, G. Kong, J. Kochman (2011)
DNA markers linked to the R2 rust resistance gene in sunflower (Helianthus annuus L.) facilitate anticipatory breeding for this disease variantMolecular Breeding, 28
M. Nordborg, S. Tavaré (2002)
Linkage disequilibrium: what history has to tell us.Trends in genetics : TIG, 18 2
P. Marmey, J. Beeching, S. Hamon, A. Charrier (2004)
Evaluation of cassava (Manihot esculenta Crantz) germplasm collections using RAPD markersEuphytica, 74
Robert Elshire, J. Glaubitz, Qi Sun, J. Poland, K. Kawamoto, E. Buckler, S. Mitchell (2011)
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity SpeciesPLoS ONE, 6
K. Wydra, V. Zinsou, V. Jorge, V. Verdier (2004)
Identification of Pathotypes of Xanthomonas axonopodis pv. manihotis in Africa and Detection of Quantitative Trait Loci and Markers for Resistance to Bacterial Blight of Cassava.Phytopathology, 94 10
Guanshui Chen, D. Pan, Yifei Zhou, Sheng Lin, Xiang Ke (2007)
Diversity and evolutionary relationship of nucleotide binding site-encoding disease-resistance gene analogues in sweet potato (Ipomoea batatas Lam.)Journal of Biosciences, 32
A. Ching, Katherine Caldwell, M. Jung, M. Dolan, O. Smith, S. Tingey, M. Morgante, A. Rafalski (2002)
SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred linesBMC Genetics, 3
B. Collard, D. Mackill (2008)
Marker-assisted selection: an approach for precision plant breeding in the twenty-first centuryPhilosophical Transactions of the Royal Society B: Biological Sciences, 363
BJ Hayes, P Bowman, A Chamberlain, ME Goddard (2011)
Genomic selection in dairy cattle: progress and challengesJ Dairy Sci, 92
D. Jennings, C. Iglesias, R. Hillocks, J. Thresh (2001)
Breeding for crop improvement.
K. Olsen, B. Schaal (2001)
Microsatellite variation in cassava (Manihot esculenta, Euphorbiaceae) and its wild relatives: further evidence for a southern Amazonian origin of domestication.American journal of botany, 88 1
M. Litt, Jeffrey Luty (1989)
A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene.American journal of human genetics, 44 3
(2012)
Tropical Plant Biol
Nikki Appleby, D. Edwards, J. Batley (2009)
New technologies for ultra-high throughput genotyping in plants.Methods in molecular biology, 513
J. Peleman, J. Voort (2003)
Breeding by design.Trends in plant science, 8 7
S. Prochnik, P. Marri, B. Desany, P. Rabinowicz, C. Kodira, M. Mohiuddin, F. Rodríguez, C. Fauquet, J. Tohme, T. Harkins, D. Rokhsar, S. Rounsley (2012)
The Cassava Genome: Current Progress, Future DirectionsTropical Plant Biology, 5
Xiaoping Tan, B. Meyers, A. Kozik, M. West, M. Morgante, D. Clair, A. Bent, R. Michelmore (2007)
Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in ArabidopsisBMC Plant Biology, 7
J. Bai, L. Pennill, Jianchang Ning, Se Lee, J. Ramalingam, C. Webb, Bingyu Zhao, Qing Sun, J. Nelson, J. Leach, S. Hulbert (2002)
Diversity in nucleotide binding site-leucine-rich repeat genes in cereals.Genome research, 12 12
T. Meuwissen, B. Hayes, M. Goddard (2001)
Prediction of total genetic value using genome-wide dense marker maps.Genetics, 157 4
E. Okogbenin, J. Marín, M. Fregene (2006)
An SSR-based molecular genetic map of cassavaEuphytica, 147
Tetsuya Sakurai, G. Plata, Fausto Rodríguez-Zapata, M. Seki, Andres Salcedo, A. Toyoda, Atsushi Ishiwata, J. Tohme, Y. Sakaki, K. Shinozaki, M. Ishitani (2007)
Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress responseBMC Plant Biology, 7
F. Nweke, D. Spencer, J. Lynam (2001)
The Cassava Transformation: Africa's Best-Kept Secret
J. Legg, B. Owor, P. Sseruwagi, J. Ndunguru (2006)
Cassava mosaic virus disease in East and Central Africa: epidemiology and management of a regional pandemic.Advances in virus research, 67
(2003)
Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis
H Becker (1993)
Pflanzenzüchtung
Raymond Cho, M. Mindrinos, Daniel Richards, Ron Sapolsky, Mary Anderson, E. Drenkard, J. Dewdney, T. Reuber, M. Stammers, N. Federspiel, A. Theologis, Wei-Hsien Yang, E. Hubbell, M. Au, Edward Chung, D. Lashkari, B. Lemieux, C. Dean, R. Lipshutz, F. Ausubel, Ronald Davis, P. Oefner (1999)
Genome-wide mapping with biallelic markers in Arabidopsis thalianaNature Genetics, 23
A. Raji, James Anderson, Olufisayo Kolade, Chike Ugwu, A. Dixon, I. Ingelbrecht (2009)
Gene-based microsatellites for cassava (Manihot esculenta Crantz): prevalence, polymorphisms, and cross-taxa utilityBMC Plant Biology, 9
M. Salmaso, Giorgia Faes, C. Segala, M. Stefanini, I. Salakhutdinov, E. Zyprian, R. Toepfer, M. Grando, R. Velasco (2004)
Genome diversity and gene haplotypes in the grapevine (Vitis vinifera L.), as revealed by single nucleotide polymorphismsMolecular Breeding, 14
É. Guimarães, J. Ruane, B. Scherf, A. Sonnino, J. Dargie (2007)
Marker-assisted selection : current status and future perspectives in crops, livestock, forestry and fish
M. Rojas, J. Pérez, H. Ceballos, D. Baena, N. Morante, F. Calle (2009)
Analysis of Inbreeding Depression in Eight S1 Cassava FamiliesCrop Science, 49
M. Gedil, M. Slabaugh, Simon Berry, Richard Johnson, R. Michelmore, Jerry Miller, Tom Gulya, Steven Knapp (2001)
Candidate disease resistance genes in sunflower cloned using conserved nucleotide-binding site motifs: genetic mapping and linkage to the downy mildew resistance gene Pl1.Genome, 44 2
C. López, C. López, A. Zuluaga, Richard Cooke, M. Delseny, Joe Tohme, Valérie Verdier (2003)
Isolation of Resistance Gene Candidates (RGCs) and characterization of an RGC cluster in cassavaMolecular Genetics and Genomics, 269
G. Tuskan, S. DiFazio, S. Jansson, J. Bohlmann, I. Grigoriev, U. Hellsten, N. Putnam, S. Ralph, S. Rombauts, A. Salamov, J. Schein, L. Sterck, A. Aerts, R. Bhalerao, R. Bhalerao, D. Blaudez, W. Boerjan, A. Brun, A. Brunner, V. Busov, M. Campbell, J. Carlson, M. Chalot, J. Chapman, G.-L. Chen, D. Cooper, P. Coutinho, J. Couturier, S. Covert, Q. Cronk, R. Cunningham, J. Davis, S. Degroeve, A. Déjardin, C. dePamphilis, J. Detter, B. Dirks, I. Dubchak, S. Duplessis, J. Ehlting, B. Ellis, K. Gendler, D. Goodstein, M. Gribskov, J. Grimwood, A. Groover, L. Gunter, B. Hamberger, B. Heinze, Y. Helariutta, B. Henrissat, D. Holligan, R. Holt, W. Huang, N. Islam-Faridi, S. Jones, M. Jones-Rhoades, R. Jørgensen, C. Joshi, J. Kangasjärvi, J. Karlsson, C. Kelleher, R. Kirkpatrick, M. Kirst, A. Kohler, U. Kalluri, F. Larimer, J. Leebens-Mack, J. Leplé, P. LoCascio, Y. Lou, S. Lucas, F. Martin, B. Montanini, C. Napoli, D. Nelson, C. Nelson, K. Nieminen, O. Nilsson, V. Pereda, G. Peter, R. Philippe, G. Pilate, A. Poliakov, J. Razumovskaya, P. Richardson, C. Rinaldi, K. Ritland, P. Rouzé, D. Ryaboy, J. Schmutz, J. Schrader, B. Segerman, H. Shin, A. Siddiqui, F. Sterky, A. Terry, C. Tsai, E. Uberbacher, P. Unneberg, J. Vahala, K. Wall, S. Wessler, G. Yang, T. Yin, C. Douglas, M. Marra, G. Sandberg, Y. Peer, D. Rokhsar (2006)
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)Science, 313
E. Buckler, Jeffry Thornsberry (2002)
Plant molecular diversity and applications to genomics.Current opinion in plant biology, 5 2
S. Kunkeaw, S. Tangphatsornruang, Duncan Smith, K. Triwitayakorn (2010)
Genetic linkage map of cassava (Manihot esculenta Crantz) based on AFLP and SSR markersPlant Breeding, 129
J. Jannink, A. Lorenz, H. Iwata (2010)
Genomic selection in plant breeding: from theory to practice.Briefings in functional genomics, 9 2
I. Benesi (2005)
Characterisation of Malawian cassava germplasm for diversity, starch extraction and its native and modified properties
B. Hayes, P. Bowman, A. Chamberlain, M. Goddard (2009)
Invited review: Genomic selection in dairy cattle: progress and challenges.Journal of dairy science, 92 2
V. Jorge, M. Fregene, M. Duque, M. Bonierbale, Joe Tohme, Valérie Verdier (2000)
Genetic mapping of resistance to bacterial blight disease in cassava (Manihot esculenta Crantz)Theoretical and Applied Genetics, 101
(2010)
Utilization of ESTs from cassava : progress on development of EST - SSR markers and an oligo DNA microarray
W. Jones (1959)
Manioc in Africa.
B. Langlands (1966)
Cassava in Uganda, 1860-1920Uganda Journal, 30
H. Budak, S. Su, N. Ergen (2006)
Revealing constitutively expressed resistance genes in Agrostis species using PCR-based motif-directed RNA fingerprinting.Genetical research, 88 3
T. Zhou, Y. Wang, Jian-Qun Chen, H. Araki, Zhiqiang Jing, K. Jiang, J. Shen, Dacheng Tian (2004)
Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genesMolecular Genetics and Genomics, 271
A Boonchanawiwat, S Sraphet, O Boonseng, DA Lightfoot, K Triwitayakorn (2011)
QTL underlying plant and first branch height in cassava (Manihot esculenta Crantz)Field Crops Research, 121
I. Abdurakhmonov, A. Abdukarimov (2008)
Application of Association Mapping to Understanding the Genetic Diversity of Plant Germplasm ResourcesInternational Journal of Plant Genomics, 2008
L. Xia, Kaiman Peng, Shiying Yang, P. Wenzl, M. Vicente, M. Fregene, A. Kilian (2005)
DArT for high-throughput genotyping of Cassava (Manihot esculenta) and its wild relativesTheoretical and Applied Genetics, 110
F. Calenge, C. Linden, W. Weg, H. Schouten, G. Arkel, C. Denancé, C. Durel (2005)
Resistance gene analogues identified through the NBS-profiling method map close to major genes and QTL for disease resistance in appleTheoretical and Applied Genetics, 110
D Jennings, C Iglesias (2001)
Cassava biology, production and utilization
A. Dixon, R. Bandyopadhyay, D. Coyne, M. Ferguson, R. Ferris, R. Hanna, J. Hughes, I. Ingelbrecht, J. Legg, N. Mahungu, V. Manyong, D. Mowbray, P. Neuenschwander, J. Whyte, P. Hartmann, R. Ortiz (2003)
Cassava: from poor farmers' crop to pacesetter of African rural development, 43
H. Murai, Z. Hashimoto, P. Sharma, T. Shimizu, Kazumasa Murata, S. Takumi, N. Mori, S. Kawasaki, C. Nakamura (2001)
Construction of a high-resolution linkage map of a rice brown planthopper (Nilaparvata lugens Stål) resistance gene bph2Theoretical and Applied Genetics, 103
E. Okogbenin, J. Marín, M. Fregene (2008)
QTL analysis for early yield in a pseudo F 2 population of cassavaAfrican Crop Science Journal, 14
M. Frisch, M. Bohn, A. Melchinger (1999)
Comparison of selection strategies for marker-assisted backcrossing of a geneCrop Science, 39
E. Okogbenin, M. Fregene (2003)
Genetic mapping of QTLs affecting productivity and plant architecture in a full-sib cross from non-inbred parents in Cassava (Manihot esculenta Crantz)Theoretical and Applied Genetics, 107
P. Chavarriaga-Aguirre, M. Maya, J. Tohme, M. Duque, C. Iglesias, M. Bonierbale, S. Kresovich, G. Kochert (1999)
Using microsatellites, isozymes and AFLPs to evaluate genetic diversity and redundancy in the cassava core collection and to assess the usefulness of DNA-based markers to maintain germplasm collectionsMolecular Breeding, 5
B. Ubi, M. Fujimori, Y. Mano, T. Komatsu (2004)
A genetic linkage map of rhodesgrass based on an F1 pseudo-testcross populationPlant Breeding, 123
S. Hahn, A. Howland, E. Terry (1980)
Correlated resistance of cassava to mosaic and bacterial blight diseasesEuphytica, 29
S. Kunkeaw, Thippawan Yoocha, S. Sraphet, A. Boonchanawiwat, O. Boonseng, David Lightfoot, K. Triwitayakorn, S. Tangphatsornruang (2010)
Construction of a genetic linkage map using simple sequence repeat markers from expressed sequence tags for cassava (Manihot esculenta Crantz)Molecular Breeding, 27
Jaime Colorado, Hernando Ramírez, Martin Fregene (2009)
Mapeo genético y análisis de QTL para carotenos en una población s1 de yucaActa Agronómica, 58
Y. Lokko, Y. Lokko, James Anderson, S. Rudd, A. Raji, D. Horvath, M. Mikel, Ryan Kim, Lei Liu, Alvaro Hernandez, A. Dixon, I. Ingelbrecht (2007)
Characterization of an 18,166 EST dataset for cassava (Manihot esculenta Crantz) enriched for drought-responsive genesPlant Cell Reports, 26
M. Sewell, B. Sherman, D. Neale (1999)
A consensus map for loblolly pine (Pinus taeda L.). I. Construction and integration of individual linkage maps from two outbred three-generation pedigrees.Genetics, 151 1
J. Beeching, P. Marmey, M. Gavalda, M. Noirot, H. Haysom, M. Hughes, A. Charrier (1993)
An Assessment of Genetic Diversity Within a Collection of Cassava (Manihot esculenta Crantz) Germplasm Using Molecular MarkersAnnals of Botany, 72
M. Moroldo, S. Paillard, R. Marconi, Legeai Fabrice, Aurélie Canaguier, C. Cruaud, V. Berardinis, C. Guichard, V. Brunaud, I. Clainche, S. Scalabrin, R. Testolin, G. Gaspero, M. Morgante, A. Adam-Blondon (2008)
A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistanceBMC Plant Biology, 8
S. Tanksley, S. McCouch (1997)
Seed banks and molecular maps: unlocking genetic potential from the wild.Science, 277 5329
M. Ferguson, S. Hearne, T. Close, S. Wanamaker, William Moskal, C. Town, J. Young, P. Marri, I. Rabbi, E. Villiers (2011)
Identification, validation and high-throughput genotyping of transcribed gene SNPs in cassavaTheoretical and Applied Genetics, 124
E. Okogbenin, M. Porto, C. Egesi, E. Espinosa, L. Santos, C. Ospina, J. Marín, E. Barrera, J. Gutiérrez, I. Ekanayake, C. Iglesias, M. Fregene (2007)
Marker‐Assisted Introgression of Resistance to Cassava Mosaic Disease into Latin American Germplasm for the Genetic Improvement of Cassava in AfricaCrop Science, 47
C. López, V. Jorge, B. Piégu, C. Mba, D. Cortes, S. Restrepo, M. Soto, M. Laudié, C. Berger, R. Cooke, M. Delseny, J. Tohme, V. Verdier (2004)
A unigene catalogue of 5700 expressed genes in cassavaPlant Molecular Biology, 56
R. Kawuki, M. Ferguson, M. Labuschagne, L. Herselman, Dong-Jin Kim (2009)
Identification, characterisation and application of single nucleotide polymorphisms for diversity assessment in cassava (Manihot esculenta Crantz)Molecular Breeding, 23
M. Fregene, F. Ángel, R. Gomez, F. Rodríguez, P. Chavarriaga, W. Roca, Joe Tohme, M. Bonierbale (1997)
A molecular genetic map of cassava (Manihot esculenta Crantz)Theoretical and Applied Genetics, 95
H. Ceballos, C. Iglesias, J. Pérez, A. Dixon (2004)
Cassava breeding: opportunities and challengesPlant Molecular Biology, 56
J. Crow (1998)
90 years ago: the beginning of hybrid maize.Genetics, 148 3
D. Queller, J. Strassmann, C. Hughes (1993)
Microsatellites and kinship.Trends in ecology & evolution, 8 8
E. Kizito, A. Bua, M. Fregene, T. Egwang, U. Gullberg, A. Westerbergh (2005)
The effect of cassava mosaic disease on the genetic diversity of cassava in UgandaEuphytica, 146
(1993)
Pflanzenzüchtung. Eugen Ulmer Verlag, Stuttgart
(1993)
Application of molecular techniques to genetic resources of cassava (Manihot esculenta Crantz, Euphorbiaceae): interspecific evolutionary relationships and interspecific characterization
T. Crosbie, S. Eathington, G. Johnson, M. Edwards, R. Reiter, Sandra Stark, Radha Mohanty, M. Oyervides, R. Buehler, A. Walker, R. Dobert, X. Delannay, J. Pershing, Michael Hall, K. Lamkey (2008)
Plant Breeding: Past, Present, and Future
M. Fregene, María Suárez, J. Mkumbira, H. Kulembeka, E. Ndedya, A. Kulaya, S. Mitchel, Urban Gullberg, Hans Rosling, Alfred Dixon, R. Dean, Steve Kresovich (2003)
Simple sequence repeat marker diversity in cassava landraces: genetic diversity and differentiation in an asexually propagated cropTheoretical and Applied Genetics, 107
J. Reif, A. Melchinger, X. Xia, M. Warburton, D. Hoisington, S. Vasal, G. Srinivasan, M. Bohn, M. Frisch (2003)
Genetic distance based on simple sequence Repeats and Heterosis in Tropical Maize PopulationsCrop Science, 43
James Anderson, D. Horvath, W. Chao, M. Foley, Alvaro Hernandez, J. Thimmapuram, Lie Liu, G. Gong, M. Band, Ryan Kim, M. Mikel (2007)
Characterization of an EST Database for the Perennial Weed Leafy Spurge: An Important Resource for Weed Biology Research, 55
R. Brumfield, P. Beerli, D. Nickerson, S. Edwards (2003)
The utility of single nucleotide polymorphisms in inferences of population historyTrends in Ecology and Evolution, 18
D. Grattapaglia, R. Sederoff (1994)
Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers.Genetics, 137 4
The advent of relatively low-cost, massively parallel, high-throughput genome sequencing and the resultant availability of high density markers are revolutionizing the ways in which molecular markers can be applied to plant breeding. With the availability of the draft cassava genome sequence, the cassava community is poised to take advantage of these new tools. Here we review the development of molecular markers applied to cassava breeding and describe the achievements that have been made using predominantly simple sequence repeat (SSR) markers. At this time of change, we report on the curation of 3,367 published and unpublished SSR primer pairs and provide a non-redundant database. We also describe ways in which new tools, particularly single nucleotide polymorphism (SNP) markers, can be applied to the development of high density maps and to fine mapping, association mapping, gene discovery, transcript profiling, inbred line development and the prediction of heterosis, gene mining in wild species and introgressions, and genome-wide approaches, including marker-assisted recurrent selection (MARS) and genomic selection (GS). Where applicable we describe how these tools are already being applied for amassing genetic gain in cassava.
Tropical Plant Biology – Springer Journals
Published: Dec 23, 2011
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.