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Astrid Rohwedder, Nana Wenz, Bernhard Stehle, Annina Huser, Nobuhiro Yamagata, Marta Zlatic, J. Truman, Hiromu Tanimoto, T. Saumweber, B. Gerber, Andreas Thum (2016)
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Whole-central nervous system functional imaging in larval DrosophilaNature Communications, 6
The larval brain of the fruit fly Drosophila melanogaster is a small, tractable model system for neuroscience. Genes for fluorescent marker proteins can be expressed in defined, spatially restricted neuron populations. Here, we introduce the methods for 1) generating a standard template of the larval central nervous system (CNS), 2) spatial mapping of expression patterns from different larvae into a reference space defined by the standard template. We provide a manually annotated gold standard that serves for evaluation of the registration framework involved in template generation and mapping. A method for registration quality assessment enables the automatic detection of registration errors, and a semi-automatic registration method allows one to correct registrations, which is a prerequisite for a high-quality, curated database of expression patterns. All computational methods are available within the larvalign software package: https://github.com/larvalign/larvalign/releases/tag/v1.0
Neuroinformatics – Springer Journals
Published: Nov 10, 2017
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