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Identification of ACC Synthetase Genes in Saccharum and their Expression Profiles During Plant Growth and in Response to Low-nitrogen Stress

Identification of ACC Synthetase Genes in Saccharum and their Expression Profiles During Plant... Sugarcane (Saccharum spp.) is economically important in China. Ethylene is an important factor in regulating plant growth and sugar accumulation in sugarcane. 1-Aminocyclopropane-1-carboxylic acid synthase (ACS) is a rate-limiting enzyme in ethylene biosynthesis. However, knowledge of the ACS gene family of Saccharum is limited. In this study, we aimed to identify and analyze ACS genes in the genome of Saccharum. Bioinformatic analyses were performed to identify differences between the ACS sequences of Saccharum and homologous gene sequences of plants. The results showed that there were four ACS genes in the genome of Saccharum, and the phylogenetic tree revealed that the proteins encoded by these genes were similar to ACS isozymes with ACS activity in other plants. Evolutionary analyses suggested that the S. spontaneum ACS gene family may have expanded via segmental duplication events under purifying selection. Expression pattern analyses showed that the Saccharum ACS gene family was differentially expressed. ACS2 and ACS3 may be involved mainly in the development of various tissues during the vegetative growth stage and may be involved in the low-nitrogen response in sugarcane. These results provide relevant information to help determine the functions of the ACS genes in Saccharum, particularly the functions in regulating ethylene stimulation of abiotic stress and sugar productivity. http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Tropical Plant Biology Springer Journals

Identification of ACC Synthetase Genes in Saccharum and their Expression Profiles During Plant Growth and in Response to Low-nitrogen Stress

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Publisher
Springer Journals
Copyright
Copyright © The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2022
ISSN
1935-9756
eISSN
1935-9764
DOI
10.1007/s12042-022-09316-8
Publisher site
See Article on Publisher Site

Abstract

Sugarcane (Saccharum spp.) is economically important in China. Ethylene is an important factor in regulating plant growth and sugar accumulation in sugarcane. 1-Aminocyclopropane-1-carboxylic acid synthase (ACS) is a rate-limiting enzyme in ethylene biosynthesis. However, knowledge of the ACS gene family of Saccharum is limited. In this study, we aimed to identify and analyze ACS genes in the genome of Saccharum. Bioinformatic analyses were performed to identify differences between the ACS sequences of Saccharum and homologous gene sequences of plants. The results showed that there were four ACS genes in the genome of Saccharum, and the phylogenetic tree revealed that the proteins encoded by these genes were similar to ACS isozymes with ACS activity in other plants. Evolutionary analyses suggested that the S. spontaneum ACS gene family may have expanded via segmental duplication events under purifying selection. Expression pattern analyses showed that the Saccharum ACS gene family was differentially expressed. ACS2 and ACS3 may be involved mainly in the development of various tissues during the vegetative growth stage and may be involved in the low-nitrogen response in sugarcane. These results provide relevant information to help determine the functions of the ACS genes in Saccharum, particularly the functions in regulating ethylene stimulation of abiotic stress and sugar productivity.

Journal

Tropical Plant Biology – Springer Journals

Published: Jun 2, 2022

Keywords: 1-aminocyclopropane-1-carboxylate synthase; Sugarcane; Expression pattern; Evolution; Abiotic stress

References

  • Regulation of ethylene biosynthesis
    Argueso, CT; Hansen, M; Kieber, JJ
  • The MEME suite
    Bailey, TL; Johnson, J; Grant, CE
  • Differential expression of 1-aminocyclopropane-1-carboxylic acid oxidase genes family of tomato
    Barry, CS; Blume, B; Bouzayen, M
  • Structure of 1-aminocyclopropane-1-carboxylate synthase, a key enzyme in the biosynthesis of the plant hormone ethylene
    Capitani, G; Hohenester, E; Feng, L
  • TBtools: an integrative toolkit developed for interactive analyses of big biological data
    Chen, C; Chen, H; Zhang, Y
  • Monoclonal antibodies against apple 1-aminocyclopropane-l-carboxylate synthase
    Dong, JG; Yip, WK; Yang, SF
  • Determination of basic chromosome numbers in the genus Saccharum by physical mapping of ribosomal RNA genes
    D’Hont, A; Ison, D; Alix, K
  • Differential regulation of four members of the ACC synthase gene family in plum
    El-Sharkawy, I; Kim, WS; Jayasankar, S
  • Comparative phylogenetic analysis of CBL reveals the gene family evolution and functional divergence in Saccharum spontaneum
    Feng, X; Wang, Y; Zhang, N
  • The Pfam protein families database: towards a more sustainable future
    Finn, RD; Coggill, P; Eberhardt, RY
  • Nitrogen in sugarcane derived from fertilizer under Brazilian field conditions
    Franco, HCJ; Otto, R; Faroni, CE
  • The elongation factor GmEF4 is involved in the response to drought and salt tolerance in soybean
    Gao, Y; Ma, J; Zheng, JC
  • Integrated nutrient management in sugarcane
    Gopalasundaram, P; Bhaskaran, A; Rakkiyappan, P
  • Transgenic alteration of ethylene biosynthesis increases grain yield in maize under field drought-stress conditions
    Habben, JE; Bao, X; Bate, NJ
  • Regulation of ACS protein stability by cytokinin and brassinosteroid
    Hansen, M; Chae, HS; Kieber, JJ
  • Analysis of genomic DNA of DcACS1, a 1-aminocyclopropane-1-carboxylate synthase gene, expressed in senescing petals of carnation (Dianthus caryophyllus) and its orthologous genes in D. superbus var. longicalycinus
    Harada, T; Murakoshi, Y; Torii, Y
  • Potential for genetic improvement of sugarcane as a source of biomass for biofuels
    Hoang, NV; Furtado, A; Botha, FC
  • New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics
    Hu, W; Hua, X; Zhang, Q
  • Crystal structures of 1-aminocyclopropane-1-carboxylate (ACC) synthase in complex with aminoethoxyvinylglycine and pyridoxal-5′-phosphate provide new insight into catalytic mechanisms
    Huai, Q; Xia, Y; Chen, Y
  • A type III ACC synthase, ACS7, is involved in root gravitropism in Arabidopsis thaliana
    Huang, SJ; Chang, CL; Wang, PH
  • 1-Aminocyclopropane-l-carboxylate synthase genes and expression
    Jakubowicz, M; Sadowski, J
  • Ancestral polyploidy in seed plants and angiosperms
    Jiao, Y; Wickett, NJ; Ayyampalayam, S
  • The rapid generation of mutation data matrices from protein sequences
    Jones, DT; Taylor, WR; Thornton, JM
  • Turnover of LeACS2, a wound-inducible1-aminocyclopropane-1-carboxylic acid synthase in tomato, is regulated by phosphorylation/dephosphorylation
    Kamiyoshihara, Y; Iwata, M; Fukaya, T
  • Circos: an information aesthetic for comparative genomics
    Krzywinski, M; Schein, J; Birol, I
  • MEGA X: molecular evolutionary genetics analysis across computing platforms
    Kumar, S; Stecher, G; Li, M
  • Clustal W and Clustal X version 2.0
    Larkin, MA; Blackshields, G; Brown, NP
  • RNA expression, protein activity, and interactions in the ACC synthase gene family in cucumber (Cucumis sativus L.)
    Lee, JH; Kim, YC; Choi, D; Horticulture
  • SMART: recent updates, new developments and status in 2015
    Letunic, I; Doerks, T; Bork, P
  • Li+-regulated 1-aminocyclopropane-1-carboxylate synthase gene expression in Arabidopsis thaliana
    Liang, X; Shen, NF; Theologis, A
  • The developmental dynamics of the maize leaf transcriptome
    Li, P; Ponnala, L; Gandotra, N
  • Apple MdACS6 regulates ethylene biosynthesis during fruit development involving ethylene-responsive factor
    Li, T; Tan, D; Liu, Z
  • Characterization and expression profiles of MaACS and MaACO genes from mulberry (Morus alba L.)
    Liu, CY; Lü, RH; Li, J
  • Kinetic and spectroscopic investigations of wild-type and mutant forms of apple 1-aminocyclopropane-1-carboxylate synthase
    Li, Y; Feng, L; Kirsch, JF
  • Ethylene control of fruit ripening: revisiting the complex network of transcriptional regulation
    Liu, M; Pirrello, J; Chervin, C
  • Phosphorylation of 1-aminocyclopropane-1-carboxylic acid synthase by MPK6, a stress-responsive mitogen-activated protein kinase, induces ethylene biosynthesis in Arabidopsis
    Liu, Y; Zhang, S
  • The evolutionary fate and consequences of duplicate genes
    Lynch, M; Conery, JS
  • The pineapple genome and the evolution of CAM photosynthesis
    Ming, R; VanBuren, R; Wai, CM
  • The regulation of ACC synthase protein turnover: A rapid route for modulating plant development and stress responses
    Park, C; Lee, HY; Yoon, GM
  • Differential expression of genes encoding 1-aminocyclopropane-1-carboxylate synthase in Arabidopsis during hypoxia
    Peng, HP; Lin, TY; Wang, NN
  • The Arabidopsis 1-aminocyclopropane-1-carboxylate synthase gene 1 is expressed during early development
    Rodrigues-Pousada, RA; De Rycke, R; Dedonder, A
  • Sequence-related amplified polymorphism (SRAP) markers for assessing genetic relationships and diversity in sugarcane germplasm collections
    Suman, A; Kimbeng, CA; Edmé, SJ
  • Phosphorylation of tomato 1-aminocyclopropane-1-carboxylic acid synthase, LE-ACS2, at the C-terminal region
    Tatsuki, M; Mori, H
  • Fisher’s exact test
    Upton, G
  • 1-aminocyclopropane-1-carboxylic acid (ACC) in plants: More than just the precursor of ethylene! Front
    Van de Poel, B; Van Der Straeten, D
  • The ethylene precursor ACC affects vegetative development independently of ethylene signaling. Front
    Vanderstraeten, L; Depaepe, T; Bertrand, S
  • Accumulation and transport of 1-aminocyclopropane-1- carboxylic acid in plants: current status, considerations for future research and agronomic applications
    Vanderstraeten, L; Van Der Straeten, D
  • Cloning and sequence analysis of three members of ACC synthase gene family in sugarcane
    Wang, AQ; Yang, LT; Wang, ZZ
  • Ethylene signaling and regulation in plant growth and stress responses
    Wang, F; Cui, X; Sun, Y
  • The GUS reporter-aided analysis of the promoter activities of Arabidopsis ACC synthase genes AtACS4, AtACS5, and AtACS7 induced by hormones and stresses
    Wang, NN; Shih, MC; Li, N
  • Genome-wide identification and expression profiling of copper-containing amine oxidase genes in sweet orange (Citrus sinensis)
    Wang, W; Wu, H; Liu, JH
  • Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum
    Wang, Y; Hua, X; Xu, J
  • Genome-wide analysis of the cyclin family in Arabidopsis and comparative phylogenetic analysis of plant cyclin-like proteins
    Wang, G; Kong, H; Sun, Y
  • Analysis on NPK-nutrient characteristics in shoot of different sugarcane genotypes
    Wei, LD; Chen, W; Zhou, Y
  • Study on nitrogen, phosphorous and potassium accumulation and utilization for three sugarcane genotypes
    Xing, YZ; Jiang, Y; Tan, Q
  • Dual activities of ACC synthase: Novel clues regarding the molecular evolution of ACS genes
    Xu, C; Hao, B; Sun, G; Mei, Y; Sun, L; Sun, Y
  • Genome-wide analysis of 1-amino-cyclopropane-1-carboxylate synthase gene family in Arabidopsis, rice, grapevine and poplar
    Xu, MH; Wang, MH
  • Biochemical diversity among the 1-amino-cyclopropane-1-carboxylate synthase isozymes encoded by the Arabidopsis gene family
    Yamagami, T; Tsuchisaka, A; Yamada, K
  • MPK3/MPK6 are involved in iron deficiency-induced ethylene production in Arabidopsis. Front
    Ye, L; Li, L; Wang, L
  • A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis
    Yin, Y; Vafeados, D; Tao, Y
  • Ethylene biosynthesis and action: a case of conservation
    Zarembinski, TI; Theologis, A
  • Genome-Wide Identification of the 1-Aminocyclopropane-1-carboxylic Acid Synthase (ACS) Genes and Their Possible Role in Sand Pear (Pyrus pyrifolia) Fruit Ripening
    Zhang, J; Du, W; Fan, J; Yang, X; Chen, Q; Liu, Y
  • Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L
    Zhang, J; Zhang, X; Tang, H
  • Recent polyploidization events in three Saccharum founding species
    Zhang, J; Zhang, Q; Li, L
  • Structure, phylogeny, allelic haplotypes and expression of sucrose transporter gene families in Saccharum
    Zhang, Q; Hu, W; Zhu, F
  • Detecting adaptive evolution and functional divergence in aminocyclopropane-1-carboxylate synthase (ACS) gene family
    Zhang, T; Qiao, Q; Zhong, Y
  • Isolation and molecular characterization of 1-aminocyclopropane-1-carboxylic acid synthase genes in Hevea brasiliensis
    Zhu, JH; Xu, J; Chang, WJ