Access the full text.
Sign up today, get DeepDyve free for 14 days.
P Brown, L Baxter, R Hickman, J Beynon, JD Moore, S Ott (2013)
MEME-LaB: motif analysis in clustersBioinformatics, 29
Zhenxia Su, Lulu Wang, Weimin Li, Lihua Zhao, Xinyu Huang, Syed Muhammad Azam, Yuan Qin (2017)
Genome-Wide Identification of Auxin Response Factor (ARF) Genes Family and its Tissue-Specific Prominent Expression in Pineapple (Ananas comosus)Tropical Plant Biology, 10
RA Sperotto, FK Ricachenevsky, GL Duarte, T Boff, KL Lopes, ER Sperb, MA Grusak, JP Fett (2009)
Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factorPlanta, 230
X Niu, J Qi, M Chen, G Zhang, A Tao, P Fang, J Xu, SA Onyedinma, J Su (2015)
Reference genes selection for transcript normalization in kenaf (Hibiscus cannabinus L.) under salinity and drought stressPeerJ, 3
S Puranik, RP Bahadur, PS Srivastava, M Prasad (2011)
Molecular cloning and characterization of a membrane associated NAC family gene, SiNAC from foxtail millet [Setaria italica (L.) P. Beauv]Mol Biotechnol, 49
A Wu, AD Allu, P Garapati, H Siddiqui, H Dortay, MI Zanor, MA Asensi-Fabado, S Munne-Bosch, C Antonio, T Tohge, AR Fernie, K Kaufmann, GP Xue, B Mueller-Roeber, S Balazadeh (2012)
JUNGBRUNNEN1, a reactive oxygen species-responsive NAC transcription factor, regulates longevity in ArabidopsisPlant Cell, 24
A Banerjee, A Roychoudhury (2015)
WRKY proteins: signaling and regulation of expression during abiotic stress responsesSci World J, 2015
ZT Yang, SJ Lu, MJ Wang, DL Bi, L Sun, SF Zhou, ZT Song, JX Liu (2014)
A plasma membrane-tethered transcription factor, NAC062/ANAC062/NTL6, mediates the unfolded protein response in ArabidopsisPlant J, 79
M Nuruzzaman, AM Sharoni, S Kikuchi (2013)
Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plantsFront Microbiol, 4
Z Xu, WC Gongbuzhaxi, F Xue, H Zhang, W Ji (2015)
Wheat NAC transcription factor TaNAC29 is involved in response to salt stressPlant Physiol Biochem, 96
C Uauy, A Distelfeld, T Fahima, A Blechl, J Dubcovsky (2006)
A NAC gene regulating senescence improves grain protein, zinc, and iron content in wheatScience, 314
K Tamura, D Peterson, N Peterson, G Stecher, M Nei, S Kumar (2011)
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methodsMol Biol Evol, 28
LS Tran, K Nakashima, Y Sakuma, SD Simpson, Y Fujita, K Maruyama, M Fujita, M Seki, K Shinozaki, K Yamaguchi-Shinozaki (2004)
Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoterPlant Cell, 16
H Hu, M Dai, J Yao, B Xiao, X Li, Q Zhang, L Xiong (2006)
Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in riceProc Natl Acad Sci U S A, 103
S Puranik, PP Sahu, PS Srivastava, M Prasad (2012)
NAC proteins: regulation and role in stress toleranceTrends Plant Sci, 17
P Chen, Y Li, L Zhao, Z Hou, M Yan, B Hu, Y Liu, SM Azam, Z Zhang, ZU Rahman (2017)
Genome-wide identification and expression profiling of ATP-binding cassette (ABC) transporter gene family in pineapple (Ananas comosus (L.) Merr.) reveal the role of AcABCG38 in pollen developmentFront Plant Sci, 8
M Nuruzzaman, R Manimekalai, AM Sharoni, K Satoh, H Kondoh, H Ooka, S Kikuchi (2010)
Genome-wide analysis of NAC transcription factor family in riceGene, 465
Q Xie, AP Sanz-Burgos, H Guo, JA Garcia, C Gutierrez (1999)
GRAB proteins, novel members of the NAC domain family, isolated by their interaction with a geminivirus proteinPlant Mol Biol, 39
X Wang, BM Basnayake, H Zhang, G Li, W Li, N Virk, T Mengiste, F Song (2009)
The Arabidopsis ATAF1, a NAC transcription factor, is a negative regulator of defense responses against necrotrophic fungal and bacterial pathogensMol Plant-Microbe Interact, 22
R Hu, G Qi, Y Kong, D Kong, Q Gao, G Zhou (2010)
Comprehensive analysis of NAC domain transcription factor gene family in Populus trichocarpaBMC Plant Biol, 10
C Uauy (2017)
Wheat genomics comes of ageCurr Opin Plant Biol, 36
YS Kim, SG Kim, JE Park, HY Park, MH Lim, NH Chua, CM Park (2006)
A membrane-bound NAC transcription factor regulates cell division in ArabidopsisPlant Cell, 18
W Hu, Y Wei, Z Xia, Y Yan, X Hou, M Zou, C Lu, W Wang, M Peng (2015)
Genome-wide identification and expression analysis of the NAC transcription factor family in cassavaPLoS One, 10
PL Lu, NZ Chen, R An, Z Su, BS Qi, F Ren, J Chen, XC Wang (2007)
A novel drought-inducible gene, ATAF1, encodes a NAC family protein that negatively regulates the expression of stress-responsive genes in ArabidopsisPlant Mol Biol, 63
HA Ernst, AN Olsen, S Larsen, L Lo Leggio (2004)
Structure of the conserved domain of ANAC, a member of the NAC family of transcription factorsEMBO Rep, 5
L Yan, A Loukoianov, G Tranquilli, M Helguera, T Fahima, J Dubcovsky (2003)
Positional cloning of the wheat vernalization gene VRN1Proc Natl Acad Sci U S A, 100
E Gasteiger, A Gattiker, C Hoogland, I Ivanyi, RD Appel, A Bairoch (2003)
ExPASy: the proteomics server for in-depth protein knowledge and analysisNucleic Acids Res, 31
H Ooka, K Satoh, K Doi, T Nagata, Y Otomo, K Murakami, K Matsubara, N Osato, J Kawai, P Carninci, Y Hayashizaki, K Suzuki, K Kojima, Y Takahara, K Yamamoto, S Kikuchi (2003)
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thalianaDNA Res, 10
K Shiriga, R Sharma, K Kumar, SK Yadav, F Hossain, N Thirunavukkarasu (2014)
Genome-wide identification and expression pattern of drought-responsive members of the NAC family in maizeMeta Gene, 2
N Wang, Y Zheng, H Xin, L Fang, S Li (2013)
Comprehensive analysis of NAC domain transcription factor gene family in Vitis viniferaPlant Cell Rep, 32
MK Jensen, JH Rung, PL Gregersen, T Gjetting, AT Fuglsang, M Hansen, N Joehnk, MF Lyngkjaer, DB Collinge (2007)
The HvNAC6 transcription factor: a positive regulator of penetration resistance in barley and ArabidopsisPlant Mol Biol, 65
S Puranik, PP Sahu, SN Mandal, VS B, SK Parida, M Prasad (2013)
Comprehensive genome-wide survey, genomic constitution and expression profiling of the NAC transcription factor family in foxtail millet (Setaria italica L.)PLoS One, 8
Y Wu, Z Deng, J Lai, Y Zhang, C Yang, B Yin, Q Zhao, L Zhang, Y Li, C Yang, Q Xie (2009)
Dual function of Arabidopsis ATAF1 in abiotic and biotic stress responsesCell Res, 19
H Ali, Y Liu, SM Azam, ZU Rahman, S Priyadarshani, W Li, X Huang, B Hu, J Xiong, U Ali (2017)
Genomic survey, characterization, and expression profile analysis of the SBP genes in pineapple (Ananas comosus L.)Int J Genomics, 2017
X Mao, H Zhang, X Qian, A Li, G Zhao, R Jing (2012)
TaNAC2, a NAC-type wheat transcription factor conferring enhanced multiple abiotic stress tolerances in ArabidopsisJ Exp Bot, 63
H Shang, W Li, C Zou, Y Yuan (2013)
Analyses of the NAC transcription factor gene family in Gossypium raimondii Ulbr.: chromosomal location, structure, phylogeny, and expression patternsJ Integr Plant Biol, 55
RW Sablowski, EM Meyerowitz (1998)
A homolog of NO APICAL MERISTEM is an immediate target of the floral homeotic genes APETALA3/PISTILLATACell, 92
S Shahnejat-Bushehri, B Mueller-Roeber, S Balazadeh (2012)
Arabidopsis NAC transcription factor JUNGBRUNNEN1 affects thermomemory-associated genes and enhances heat stress tolerance in primed and unprimed conditionsPlant Signal Behav, 7
C Liu, T Xie, C Chen, A Luan, J Long, C Li, Y Ding, Y He (2017)
Genome-wide organization and expression profiling of the R2R3-MYB transcription factor family in pineapple (Ananas comosus)BMC Genomics, 18
I Arabidopsis Genome (2000)
Analysis of the genome sequence of the flowering plant Arabidopsis thalianaNature, 408
C Trapnell, L Pachter, SL Salzberg (2009)
TopHat: discovering splice junctions with RNA-SeqBioinformatics, 25
PJ Rushton, MT Bokowiec, S Han, H Zhang, JF Brannock, X Chen, TW Laudeman, MP Timko (2008)
Tobacco transcription factors: novel insights into transcriptional regulation in the SolanaceaePlant Physiol, 147
S Priyadarshani, B Hu, W Li, H Ali, H Jia, L Zhao, SP Ojolo, SM Azam, J Xiong, M Yan (2018)
Simple protoplast isolation system for gene expression and protein interaction studies in pineapple (Ananas comosus L)Plant Methods, 14
A Cenci, V Guignon, N Roux, M Rouard (2014)
Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous subsubgroups for monocots and dicotsPlant Mol Biol, 85
E Souer, A Houwelingen, D Kloos, J Mol, R Koes (1996)
The no apical meristem gene of Petunia is required for pattern formation in embryos and flowers and is expressed at meristem and primordia boundariesCell, 85
SG Kim, SY Kim, CM Park (2007)
A membrane-associated NAC transcription factor regulates salt-responsive flowering via FLOWERING LOCUS T in ArabidopsisPlanta, 226
Q Bu, H Jiang, CB Li, Q Zhai, J Zhang, X Wu, J Sun, Q Xie, C Li (2008)
Role of the Arabidopsis thaliana NAC transcription factors ANAC019 and ANAC055 in regulating jasmonic acid-signaled defense responsesCell Res, 18
H Saga, T Ogawa, K Kai, H Suzuki, Y Ogata, N Sakurai, D Shibata, D Ohta (2012)
Identification and characterization of ANAC042, a transcription factor family gene involved in the regulation of camalexin biosynthesis in ArabidopsisMol Plant-Microbe Interact, 25
S Balazadeh, A Wu, B Mueller-Roeber (2010)
Salt-triggered expression of the ANAC092-dependent senescence regulon in Arabidopsis thalianaPlant Signal Behav, 5
T Ren, F Qu, TJ Morris (2000)
HRT gene function requires interaction between a NAC protein and viral capsid protein to confer resistance to turnip crinkle virusPlant Cell, 12
MK Jensen, PH Hagedorn, M Torres-Zabala, MR Grant, JH Rung, DB Collinge, MF Lyngkjaer (2008)
Transcriptional regulation by an NAC (NAM-ATAF1,2-CUC2) transcription factor attenuates ABA signalling for efficient basal defence towards Blumeria graminis f. sp. hordei in ArabidopsisPlant J, 56
K Nakashima, LS Tran, D Nguyen, M Fujita, K Maruyama, D Todaka, Y Ito, N Hayashi, K Shinozaki, K Yamaguchi-Shinozaki (2007)
Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in ricePlant J, 51
AK Singh, V Sharma, AK Pal, V Acharya, PS Ahuja (2013)
Genome-wide organization and expression profiling of the NAC transcription factor family in potato (Solanum tuberosum L.)DNA Res, 20
CV Ha, MN Esfahani, Y Watanabe, UT Tran, S Sulieman, K Mochida, DV Nguyen, LS Tran (2014)
Genome-wide identification and expression analysis of the CaNAC family members in chickpea during development, dehydration and ABA treatmentsPLoS One, 9
L He, X Shi, Y Wang, Y Guo, K Yang, Y Wang (2017)
Arabidopsis ANAC069 binds to C[a/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerancePlant Mol Biol, 93
MK Udvardi, K Kakar, M Wandrey, O Montanari, J Murray, A Andriankaja, JY Zhang, V Benedito, JM Hofer, F Chueng (2007)
Legume transcription factors: global regulators of plant development and response to the environmentPlant Physiol, 144
M Zhang, Y Liu, H Shi, M Guo, M Chai, Q He, M Yan, D Cao, L Zhao, H Cai, Y Qin (2018)
Evolutionary and expression analyses of soybean basic leucine zipper transcription factor familyBMC Genomics, 19
AN Olsen, HA Ernst, LL Leggio, K Skriver (2005)
NAC transcription factors: structurally distinct, functionally diverseTrends Plant Sci, 10
S. A. Goff (2002)
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)Science, 296
Linhai Wang, Sheng Yu, Chaobo Tong, Yingzhong Zhao, Yan Liu, Chi Song, Yanxin Zhang, Xudong Zhang, Ying Wang, Wei Hua, Donghua Li, Dan Li, Fang Li, Jingyin Yu, Chunyan Xu, Xuelian Han, Shunmou Huang, Shuaishuai Tai, Junyi Wang, Xun Xu, Yingrui Li, Shengyi Liu, Rajeev K Varshney, Jun Wang, Xiurong Zhang (2014)
Genome sequencing of the high oil crop sesame provides insight into oil biosynthesisGenome Biology, 15
JS Jeong, YS Kim, KH Baek, H Jung, SH Ha, Y Choi, M Kim, C Reuzeau, JK Kim (2010)
Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditionsPlant Physiol, 153
SU Huh, SB Lee, HH Kim, KH Paek (2012)
ATAF2, a NAC transcription factor, binds to the promoter and regulates NIT2 gene expression involved in auxin biosynthesisMol Cell, 34
NAC [no apical meristem (NAM), Arabidopsis transcription activation factor (ATAF1/2) and cup-shaped cotyledon (CUC2)] proteins is one of the largest classes of plant specific transcription factors and plays a critical role in plant growth, development process, and abiotic/biotic stresses. In this study, 73 NAC genes (AcNACs) were identified from the pineapple genome. Phylogenetic analysis showed that AcNACs could be divided into 13 subgroups. Gene structure analysis showed that the number of introns varied from 0 to 12. Motif analysis revealed that all of the identified AcNACs had the conserved NAC domain and motif 6 is the conserved motif. Most of the AcNACs were located in chromosome except AcNAC68, AcNAC70, AcNAC71 and AcNAC72, which were presented on unanchored scaffolds. Furthermore, we analysed AcNAC expression patterns in vegetative organs and in sexual organs, namely ovules and stamens, at different developmental stages respectively. Five AcNAC genes (AcNAC6; AcNAC7; AcNAC48; AcNAC70; AcNAC71) were not detected in vegetative organs. AcNAC55 exhibited the highest expression level in vegetative organs. Six AcNAC genes (AcNAC11, AcNAC18, AcNAC27, AcNAC28, AcNAC40, and AcNAC55) showed high expression levels in all reproductive organs. Seven AcNAC genes (AcNAC26, AcNAC34, AcNAC40, AcNAC43, AcNAC63 and AcNAC65) were induced under abiotic stresses. These data provided a new insight of NAC gene family in pineapple and revealed the diverse function of NAC transcription factors in pineapple growth and development.
Tropical Plant Biology – Springer Journals
Published: May 27, 2019
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.