Access the full text.
Sign up today, get DeepDyve free for 14 days.
Loading next page...
/lp/springer-journals/genome-wide-classification-and-evolutionary-and-functional-analyses-of-7ru02Mms5v
References (48)
-
Houping Wang, Yanru Hu, Jinjing Pan, Diqiu Yu (2015)
Arabidopsis VQ motif-containing proteins VQ12 and VQ29 negatively modulate basal defense against Botrytis cinereaScientific Reports, 5
-
Shin-Han Shiu, M. Shih, Wen-Hsiung Li (2005)
Transcription Factor Families Have Much Higher Expansion Rates in Plants than in Animals1Plant Physiology, 139
-
J. Kaiser (2000)
Plant genetics. From genome to functional genomics.Science, 288 5472
-
(2017)
Genome-wide analysis of VQmotif -
P. Sarris, Zane Duxbury, Sung Huh, Yan Ma, C. Segonzac, J. Skłenar, P. Derbyshire, V. Cevik, Ghanasyam Rallapalli, Simon Saucet, L. Wirthmueller, Frank Menke, K. Sohn, Jonathan Jones (2015)
A Plant Immune Receptor Detects Pathogen Effectors that Target WRKY Transcription FactorsCell, 161
-
A. Oliveira-Filho, Adriana Pimenta, Márcia Rojas, M. Chagas, J. Crescente, D. Crespo, J. Lemos (2010)
Prevalence and genotyping of hepatitis C virus in blood donors in the state of Pará, Northern Brazil.Memorias do Instituto Oswaldo Cruz, 105 1
-
Louxin Zhang, Bin Ma, Lusheng Wang, Ying Xu (2003)
Greedy method for inferring tandem duplication historyBioinformatics, 19 12
-
B. Fiil, M. Petersen (2011)
Constitutive expression of MKS1 confers susceptibility to Botrytis cinerea infection independent of PAD3 expressionPlant Signaling & Behavior, 6
-
Li-jia Qu, Yuxian Zhu (2006)
Transcription factor families in Arabidopsis: major progress and outstanding issues for future research.Current opinion in plant biology, 9 5
-
Elian Perruc, M. Charpenteau, B. Ramirez, A. Jauneau, J. Galaud, R. Ranjeva, B. Ranty (2004)
A novel calmodulin-binding protein functions as a negative regulator of osmotic stress tolerance in Arabidopsis thaliana seedlings.The Plant journal : for cell and molecular biology, 38 3
-
Yanru Hu, Ligang Chen, Houping Wang, Liping Zhang, F. Wang, Diqiu Yu (2013)
Arabidopsis transcription factor WRKY8 functions antagonistically with its interacting partner VQ9 to modulate salinity stress tolerance.The Plant journal : for cell and molecular biology, 74 5
-
Jun Yu, Songnian Hu, Jun Wang, G. Wong, Songgang Li, Bin Liu, Yajun Deng, L. Dai, Yan Zhou, Xiuqing Zhang, Mengliang Cao, Jing Liu, Jiandong Sun, Jiabin Tang, Yanjiong Chen, Xiaobing Huang, Wei Lin, C. Ye, W. Tong, Lijuan Cong, Jianing Geng, Yujun Han, Lin Li, Wei Li, G. Hu, Xiangang Huang, Wenjie Li, Jian Li, Zhanwei Liu, Long Li, Jianping Liu, Q. Qi, Jinsong Liu, Li Li, Tao Li, Xuegang Wang, Hong Lu, Tingting Wu, Miao Zhu, Peixiang Ni, Hua Han, Wei Dong, Xiaoyu Ren, Xiaoli Feng, P. Cui, Xianran Li, Hao Wang, Xin Xu, W. Zhai, Zhao Xu, Jinsong Zhang, Sijie He, Jianguo Zhang, Jichen Xu, Kunlin Zhang, Xianwu Zheng, Jianhai Dong, Wanyong Zeng, Lin Tao, Jia Ye, Jun Tan, Xide Ren, Xuewei Chen, Jun He, Daofeng Liu, W. Tian, Chaoguang Tian, Hong’ai Xia, Qiyu Bao, Gang Li, Hui Gao, Ting Cao, Juan Wang, Wenming Zhao, Ping Li, Wei Chen, Xudong Wang, Yong Zhang, Jian-Fei Hu, Jing Wang, Song Liu, Jian Yang, Guangyu Zhang, Yuqing Xiong, Zhijie Li, Long Mao, Chengshu Zhou, Zhen Zhu, Runsheng Chen, Bailin Hao, Wei-Mou Zheng, S. Chen, W. Guo, Guojie Li, Siqi Liu, M. Tao, Jian Wang, Lihuang Zhu, Longping Yuan, Huanming Yang (2002)
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)Science, 296
-
Junqiu Chen, Houping Wang, Yang Li, Jinjing Pan, Yanru Hu, Diqiu Yu (2018)
Arabidopsis VQ10 interacts with WRKY8 to modulate basal defense against Botrytis cinerea.Journal of integrative plant biology, 60 10
-
Yuan Zhou, Yan Yang, Xiaoping Zhou, Yingjun Chi, B. Fan, Zhixiang Chen (2016)
Structural and Functional Characterization of the VQ Protein Family and VQ Protein Variants from SoybeanScientific Reports, 6
-
Jinjing Pan, Houping Wang, Yanru Hu, Diqiu Yu (2018)
Arabidopsis VQ18 and VQ26 proteins interact with ABI5 transcription factor to negatively modulate ABA response during seed germinationThe Plant Journal, 95
-
R. Ming, R. VanBuren, C. Wai, Haibao Tang, M. Schatz, J. Bowers, E. Lyons, Ming-li Wang, Jung Chen, E. Biggers, Jisen Zhang, Lixian Huang, Lingmao Zhang, Wenjing Miao, Jian Zhang, Z. Ye, Chenyong Miao, Z. Lin, Hao Wang, Hongye Zhou, Won Yim, Henry Priest, Chunfang Zheng, M. Woodhouse, P. Edger, R. Guyot, Hao-Bo Guo, Hong Guo, Guangyong Zheng, Ratnesh Singh, Anupma Sharma, X. Min, Yun Zheng, Hayan Lee, James Gurtowski, F. Sedlazeck, A. Harkess, M. McKain, Zhenyang Liao, Jingping Fang, Juan Liu, Xiaodan Zhang, Qing Zhang, Weichang Hu, Yuan Qin, Kai Wang, Li-Yu Chen, N. Shirley, Yann-rong Lin, L. Liu, Alvaro Hernandez, C. Wright, V. Bulone, G. Tuskan, Katy Heath, F. Zee, P. Moore, R. Sunkar, J. Leebens-Mack, T. Mockler, J. Bennetzen, M. Freeling, D. Sankoff, A. Paterson, X. Zhu, Xiaohan Yang, J. Smith, J. Cushman, R. Paull, Qingyi Yu (2015)
The pineapple genome and the evolution of CAM photosynthesisNature Genetics, 47
-
A. Paterson, M. Freeling, Haibao Tang, Xiyin Wang (2010)
Insights from the comparison of plant genome sequences.Annual review of plant biology, 61
-
Klaus Petersen, J. Qiu, Juri Lütje, B. Fiil, Sidsel Hansen, J. Mundy, M. Petersen (2010)
Arabidopsis MKS1 Is Involved in Basal Immunity and Requires an Intact N-terminal Domain for Proper FunctionPLoS ONE, 5
-
Yanjun Jing, Rongcheng Lin (2015)
The VQ Motif-Containing Protein Family of Plant-Specific Transcriptional Regulators1Plant Physiology, 169
-
Weibin Song, Haiming Zhao, Xiangbo Zhang, L. Lei, Jinsheng Lai (2016)
Genome-Wide Identification of VQ Motif-Containing Proteins and their Expression Profiles Under Abiotic Stresses in MaizeFrontiers in Plant Science, 6
-
Doyoun Kim, Doyoun Kim, Soon‐Ik Kwon, Chang Choi, Hyun-Jeong Lee, I. Ahn, Sung-Han Park, S. Bae, S. Lee, D. Hwang (2013)
Expression analysis of rice VQ genes in response to biotic and abiotic stresses.Gene, 529 2
-
Liu-Feng Ma, Longxing Hu, Jibiao Fan, Erick Amombo, A. Khaldun, Yong Zheng, Liang Chen (2017)
Cotton GhERF38 gene is involved in plant response to salt/drought and ABAEcotoxicology, 26
-
Min Wang, A. Vannozzi, Gang Wang, Y. Zhong, Massimiliano Corso, Erika Cavallini, Z. Cheng (2015)
A comprehensive survey of the grapevine VQ gene family and its transcriptional correlation with WRKY proteinsFrontiers in Plant Science, 6
-
F. Naznin, R. Sarker, D. Essam (2011)
Vertical decomposition with Genetic Algorithm for Multiple Sequence AlignmentBMC Bioinformatics, 12
-
Aihua Wang, Damien Garcia, Hongyu Zhang, Ke Feng, A. Chaudhury, F. Berger, W. Peacock, E. Dennis, M. Luo (2010)
The VQ motif protein IKU1 regulates endosperm growth and seed size in Arabidopsis.The Plant journal : for cell and molecular biology, 63 4
-
Martin Weyhe, Lennart Eschen-Lippold, Pascal Pecher, D. Scheel, Justin Lee (2014)
Ménage à trois: The complex relationships between mitogen-activated protein kinases, WRKY transcription factors and VQ-motif-containing proteins.Plant signaling & behavior, 9
-
Yanjuan Jiang, Diqiu Yu (2016)
The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance1Plant Physiology, 171
-
Yu-jie Ye, Yun-yi Xiao, Yan-chao Han, W. Shan, Zhong-qi Fan, Qun-Gang Xu, J. Kuang, Wang-jin Lu, P. Lakshmanan, Jian-ye Chen (2016)
Banana fruit VQ motif-containing protein5 represses cold-responsive transcription factor MaWRKY26 involved in the regulation of JA biosynthetic genesScientific Reports, 6
-
Yanjuan Jiang, Diqiu Yu (2016)
The WRKY 57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance 1 -
Martin Weyhe, Lennart Eschen-Lippold, Pascal Pecher, Dierk Scheel, Justin Lee (2014)
Ménage à troisPlant Signaling & Behavior, 9
-
Xiaobo Wang, Haowei Zhang, Genlou Sun, Yuan-Jin Jin, L. Qiu (2014)
Identification of active VQ motif-containing genes and the expression patterns under low nitrogen treatment in soybean.Gene, 543 2
-
B. Chapman, J. Bowers, Stefan Schulze, A. Paterson (2004)
A comparative phylogenetic approach for dating whole genome duplication eventsBioinformatics, 20 2
-
Yunliang Li, Yanjun Jing, Junjiao Li, Gang Xu, Rongcheng Lin (2014)
Arabidopsis VQ MOTIF-CONTAINING PROTEIN29 Represses Seedling Deetiolation by Interacting with PHYTOCHROME-INTERACTING FACTOR11[C][W][OPEN]Plant Physiology, 164
-
J. Schlueter, Jer-Young Lin, S. Schlueter, Iryna Vasylenko-Sanders, Shweta Deshpande, Jing Yi, M. O'Bleness, B. Roe, Rex Nelson, B. Scheffler, S. Jackson, R. Shoemaker (2007)
Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencingBMC Genomics, 8
-
Yujiao Wang, Huanlong Liu, Dongyue Zhu, Yameng Gao, Hanwei Yan, Y. Xiang (2017)
Genome-wide analysis of VQ motif-containing proteins in Moso bamboo (Phyllostachys edulis)Planta, 246
-
Zhibing Lai, Ying Li, Fei Wang, Yuan Cheng, B. Fan, Jingquan Yu, Zhixiang Chen (2011)
Arabidopsis Sigma Factor Binding Proteins Are Activators of the WRKY33 Transcription Factor in Plant Defense[W]Plant Cell, 23
-
Pascal Pecher, Lennart Eschen-Lippold, Siska Herklotz, Katja Kuhle, Kai Naumann, Gerit Bethke, J. Uhrig, Martin Weyhe, D. Scheel, Justin Lee (2014)
The Arabidopsis thaliana mitogen-activated protein kinases MPK3 and MPK6 target a subclass of 'VQ-motif'-containing proteins to regulate immune responses.The New phytologist, 203 2
-
T. Eulgem, P. Rushton, S. Robatzek, I. Somssich (2000)
The WRKY superfamily of plant transcription factors.Trends in plant science, 5 5
-
Rihua Lei, Zhenbing Ma, Diqiu Yu (2018)
WRKY2/34–VQ20 Modules in Arabidopsis thaliana Negatively Regulate Expression of a Trio of Related MYB Transcription Factors During Pollen DevelopmentFrontiers in Plant Science, 9
-
Haibao Tang, J. Bowers, Xiyin Wang, A. Paterson (2009)
Angiosperm genome comparisons reveal early polyploidy in the monocot lineageProceedings of the National Academy of Sciences, 107
-
H. Cai, Sheng Yang, Yan Yan, Zhuoli Xiao, Junbin Cheng, Ji Wu, Ai-lian Qiu, Yan Lai, Shao-liang Mou, D. Guan, Ronghua Huang, Shuilin He (2015)
CaWRKY6 transcriptionally activates CaWRKY40, regulates Ralstonia solanacearum resistance, and confers high-temperature and high-humidity tolerance in pepper.Journal of experimental botany, 66 11
-
E. Andreasson, Thomas. Jenkins, P. Brodersen, Stephan Thorgrimsen, Nikolaj Petersen, Shijiang Zhu, J. Qiu, P. Micheelsen, Anne Rocher, M. Petersen, M. Newman, Henrik Nielsen, H. Hirt, I. Somssich, O. Mattsson, J. Mundy (2005)
The MAP kinase substrate MKS1 is a regulator of plant defense responsesThe EMBO Journal, 24
-
S. Goff, D. Ricke, T. Lan, G. Presting, Ronglin Wang, Molly Dunn, J. Glazebrook, A. Sessions, P. Oeller, H. Varma, D. Hadley, Don Hutchison, Christopher Martin, F. Katagiri, B. Lange, Todd Moughamer, Yumei Xia, P. Budworth, Jingping Zhong, Trini Miguel, U. Paszkowski, Shiping Zhang, M. Colbert, Wei-lin Sun, Lili Chen, B. Cooper, Sylvia Park, T. Wood, Long Mao, P. Quail, R. Wing, R. Dean, Yeisoo Yu, A. Zharkikh, Richard Shen, S. Sahasrabudhe, Alun Thomas, R. Cannings, A. Gutin, D. Pruss, J. Reid, S. Tavtigian, Jeff Mitchell, G. Eldredge, T. Scholl, R. Miller, Satish Bhatnagar, N. Adey, T. Rubano, N. Tusneem, Rosann Robinson, Jane Feldhaus, T. Macalma, A. Oliphant, S. Briggs (2002)
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).Science, 296 5565
-
Na Li, Xianghua Li, Jinghua Xiao, Shiping Wang (2014)
Comprehensive analysis of VQ motif-containing gene expression in rice defense responses to three pathogensPlant Cell Reports, 33
-
Yuan Cheng, Yuan Zhou, Yan Yang, Ying-Jun Chi, Jie Zhou, Jian-ye Chen, Fei Wang, B. Fan, K. Shi, Yanhong Zhou, Jingquan Yu, Zhixiang Chen (2012)
Structural and Functional Analysis of VQ Motif-Containing Proteins in Arabidopsis as Interacting Proteins of WRKY Transcription Factors1[W][OA]Plant Physiology, 159
-
Yinshuai Xie, W. Li, D. Guo, J. Dong, Qing Zhang, Y. Fu, Dongtao Ren, M. Peng, Yiji Xia, Yiji Xia (2010)
The Arabidopsis gene SIGMA FACTOR-BINDING PROTEIN 1 plays a role in the salicylate- and jasmonate-mediated defence responses.Plant, cell & environment, 33 5
-
Parinita Agarwal, M. Reddy, J. Chikara (2011)
WRKY: its structure, evolutionary relationship, DNA-binding selectivity, role in stress tolerance and development of plantsMolecular Biology Reports, 38
-
Klaus Petersen, B. Fiil, J. Mundy, M. Petersen (2008)
Downstream targets of WRKY33Plant Signaling & Behavior, 3
- Publisher
- Springer Journals
- Copyright
- Copyright © 2019 by Springer Science+Business Media, LLC, part of Springer Nature
- Subject
- Life Sciences; Plant Sciences; Plant Genetics and Genomics; Plant Breeding/Biotechnology; Plant Ecology; Transgenics
- ISSN
- 1935-9756
- eISSN
- 1935-9764
- DOI
- 10.1007/s12042-019-09224-4
- Publisher site
- See Article on Publisher Site
Abstract
VQ protein, contain a conserved and short FxxxVQxLTG amino acid sequence motif. Some VQ proteins play important roles in development process and abiotic/biotic stress in plants. However, there has not been a systematic study of the VQ family in plants. The results revealed that Group I genes are conserved in plant development in angiosperms; Group IV and Group X in eudicots and Group I, Group VI and Group VII in monocots are involved in drought response; Group I and Group IV are the most important groups and conservational in response to salt stress in eudicots but not in monocots; VQ genes in Group II and Group IV which responded to cold stress were overlapped in angiosperms; Group IV, Group V, Group VI and Group IX in eudicots and Group VI in monocots play key roles in response to ABA treatment; Group IV in eudicots while Group V and Group VI are irreplaceable in response to biotic stress in monocots. We propose that this study provides solid foundations for the investigation of the functions and evolution of VQ genes in angiosperms.
Journal
Tropical Plant Biology – Springer Journals
Published: Apr 23, 2019