Access the full text.
Sign up today, get DeepDyve free for 14 days.
Loading next page...
/lp/springer-journals/genome-wide-analysis-and-characterization-of-the-trx-gene-family-in-Br4hwImRai
References (57)
-
H. Escobar-Sepúlveda, L. Trejo-Téllez, S. García-Morales, F. Gómez-Merino (2017)
Expression patterns and promoter analyses of aluminum-responsive NAC genes suggest a possible growth regulation of rice mediated by aluminum, hormones and NAC transcription factorsPLoS ONE, 12
-
(2009)
Bioinformatics and Genomics Department Prince Felipe Research Center -
Y. Peer, Steven Maere, A. Meyer (2009)
The evolutionary significance of ancient genome duplicationsNature Reviews Genetics, 10
-
Lijun Sun, Haiying Ren, Ruoxue Liu, Baoyan Li, Tingquan Wu, F. Sun, Huimin Liu, Xiaomen Wang, Hansong Dong (2010)
An h-type thioredoxin functions in tobacco defense responses to two species of viruses and an abiotic oxidative stress.Molecular plant-microbe interactions : MPMI, 23 11
-
S. Leppä, L. Pirkkala, S. Chow, J. Eriksson, L. Sistonen (1997)
Thioredoxin Is Transcriptionally Induced upon Activation of Heat Shock Factor 2*The Journal of Biological Chemistry, 272
-
Y. Meyer, B. Buchanan, F. Vignols, J. Reichheld (2009)
Thioredoxins and glutaredoxins: unifying elements in redox biology.Annual review of genetics, 43
-
P. Librado, J. Rozas (2009)
DnaSP v 5 : a software for comprehensive analysis of DNA polymorphism data -
Lauri Nikkanen, J. Toivola, M. Díaz, E. Rintamäki (2017)
Chloroplast thioredoxin systems: prospects for improving photosynthesisPhilosophical Transactions of the Royal Society B: Biological Sciences, 372
-
L. Zagorchev, C. Seal, I. Kranner, M. Odjakova (2013)
A Central Role for Thiols in Plant Tolerance to Abiotic StressInternational Journal of Molecular Sciences, 14
-
K. Tamura, G. Stecher, D. Peterson, A. Filipski, Sudhir Kumar (2013)
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.Molecular biology and evolution, 30 12
-
J. Wolf (2002)
Comparison of two soya bean simulation models under climate change : I Model calibration and sensitivity analysesClimate Research, 20
-
Kunbo Wang, Zhiwen Wang, Fuguang Li, W. Ye, Junyi Wang, G. Song, Zhen Yue, L. Cong, Haihong Shang, Shilin Zhu, Changsong Zou, Qin Li, You-lu Yuan, Cai-rui Lu, Hengling Wei, Caiyun Gou, Zequn Zheng, Ye Yin, Xueyang Zhang, Kun Liu, Bo Wang, Chi Song, Nan Shi, R. Kohel, R. Percy, John Yu, Yuxian Zhu, Jun Wang, Shuxun Yu (2012)
The draft genome of a diploid cotton Gossypium raimondiiNature Genetics, 44
-
(2016)
2016) Analysis of cis-acting regulatory elements -
L Sun, H Ren, R Liu, B Li, T Wu, F Sun, H Dong (2010)
An h-type thioredoxin functions in tobacco defense responses to two species of viruses and an abiotic oxidative stress. Molecular Plant-Microbe InteractionsMPMI, 23
-
Ondati Evans, Lingling Dou, Yaning Guo, C. Pang, Hengling Wei, M. Song, S. Fan, Shuxun Yu (2016)
GhNAC18, a novel cotton (Gossypium hirsutum L.) NAC gene, is involved in leaf senescence and diverse stress responsesAfrican Journal of Biotechnology, 15
-
Yong Li, Yanming Zhu, Yang Liu, Y. Shu, Fanjiang Meng, Yanmin Lu, Bei Liu, X. Bai, D. Guo (2008)
CIS-REGULATORY ELEMENT BASED GENE FINDING: AN APPLICATION IN ARABIDOPSIS THALIANA -
Long-guo Jin, Jin-yuan Liu (2008)
Molecular cloning, expression profile and promoter analysis of a novel ethylene responsive transcription factor gene GhERF4 from cotton (Gossypium hirstum).Plant physiology and biochemistry : PPB, 46 1
-
Kamel Chibani, G. Wingsle, J. Jacquot, E. Gelhaye, N. Rouhier (2009)
Comparative genomic study of the thioredoxin family in photosynthetic organisms with emphasis on Populus trichocarpa.Molecular plant, 2 2
-
Yong Li, Yanming Zhu, Yang Liu, Y. Shu, Fanjiang Meng, Yanmin Lu, Bei Liu, X. Bai, D. Guo (2008)
Cis-regulatory element based gene finding: an application in Arabidopsis thaliana.Genome informatics. International Conference on Genome Informatics, 21
-
Róża Biłas, Katarzyna Szafran, K. Hnatuszko-Konka, A. Kononowicz (2016)
Cis-regulatory elements used to control gene expression in plantsPlant Cell, Tissue and Organ Culture (PCTOC), 127
-
G. Cramer, Kaoru Urano, S. Delrot, M. Pezzotti, K. Shinozaki (2011)
Effects of abiotic stress on plants: a systems biology perspectiveBMC Plant Biology, 11
-
KJ Livak, TD Schmittgen (2001)
Analysis of relative gene expression data using real-time quantitative PCR andMethods, 25
-
Anyuan Guo, Qihui Zhu, Xin Chen, Jingchu Luo (2007)
[GSDS: a gene structure display server].Yi chuan = Hereditas, 29 8
-
Qing Wang, X. Ning, Dong Pei, Jianmin Zhao, L. You, Chunyan Wang, Huifeng Wu (2013)
Molecular cloning, characterization and expression profiles of thioredoxin 1 and thioredoxin 2 genes in Mytilus galloprovincialisChinese Journal of Oceanology and Limnology, 31
-
Yanyan Meng, Feng-xi Liu, C. Pang, S. Fan, M. Song, Dan Wang, Weihua Li, Shuxun Yu (2011)
Label-free quantitative proteomics analysis of cotton leaf response to nitric oxide.Journal of proteome research, 10 12
-
Q. He, Don Jones, Wei Li, Fuliang Xie, Jun Ma, R. Sun, Qinglian Wang, Shuijin Zhu, Baohong Zhang (2016)
Genome-Wide Identification of R2R3-MYB Genes and Expression Analyses During Abiotic Stress in Gossypium raimondiiScientific Reports, 6
-
E. Gelhaye, N. Rouhier, N. Navrot, J. Jacquot (2004)
The plant thioredoxin systemCellular and Molecular Life Sciences CMLS, 62
-
K. Livak, Thomas Schmittgen (2001)
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.Methods, 25 4
-
M. Nuruzzaman, A. Sharoni, Kouji Satoh, Turki Al-Shammari, T. Shimizu, T. Sasaya, T. Omura, S. Kikuchi (2012)
The thioredoxin gene family in rice: genome-wide identification and expression profiling under different biotic and abiotic treatments.Biochemical and biophysical research communications, 423 2
-
Jia Ye, L. Fang, Hongkun Zheng, Yong Zhang, Jing Chen, Zengjin Zhang, Jing Wang, Shengting Li, Ruiqiang Li, L. Bolund, Jun Wang (2006)
WEGO: a web tool for plotting GO annotationsNucleic Acids Research, 34
-
Krzysztof Bobik, Tessa Burch-Smith (2015)
Chloroplast signaling within, between and beyond cellsFrontiers in Plant Science, 6
-
Y. Meyer, W. Siala, T. Bashandy, C. Riondet, F. Vignols, J. Reichheld (2008)
Glutaredoxins and thioredoxins in plants.Biochimica et biophysica acta, 1783 4
-
M. Baloğlu (2014)
Genome-wide in silico identification and comparison of Growth Regulating Factor (GRF) genes in Cucurbitaceae family.Plant Omics, 7
-
I. Thormählen, Tobias Meitzel, Julia Groysman, Alexandra Öchsner, Edda Roepenack-Lahaye, B. Naranjo, F. Cejudo, P. Geigenberger (2015)
Thioredoxin f1 and NADPH-Dependent Thioredoxin Reductase C Have Overlapping Functions in Regulating Photosynthetic Metabolism and Plant Growth in Response to Varying Light Conditions1[OPEN]Plant Physiology, 169
-
P. Librado, J. Rozas (2009)
DnaSP v5: a software for comprehensive analysis of DNA polymorphism dataBioinformatics, 25 11
-
M. Lin, C. Pang, S. Fan, M. Song, Hengling Wei, Shuxun Yu (2015)
Global analysis of the Gossypium hirsutum L. Transcriptome during leaf senescence by RNA-SeqBMC Plant Biology, 15
-
Y. Funato, H. Miki (2007)
Nucleoredoxin, a novel thioredoxin family member involved in cell growth and differentiation.Antioxidants & redox signaling, 9 8
-
J. Reichheld, Dominique Mestres-Ortega, C. Laloi, Y. Meyer (2002)
The multigenic family of thioredoxin h in Arabidopsis thaliana: specific expression and stress responsePlant Physiology and Biochemistry, 40
-
C. Laloi, N. Rayapuram, Y. Chartier, J. Grienenberger, G. Bonnard, Y. Meyer (2001)
Identification and characterization of a mitochondrial thioredoxin system in plantsProceedings of the National Academy of Sciences of the United States of America, 98
-
A. Żarnecki (1999)
Global analysis ofEuropean Physical Journal C, 11
-
Yana Zhu, Dongqiao Shi, Mengbin Ruan, Lili Zhang, Zhaohong Meng, Jie Liu, Wei-cai Yang (2013)
Transcriptome Analysis Reveals Crosstalk of Responsive Genes to Multiple Abiotic Stresses in Cotton (Gossypium hirsutum L.)PLoS ONE, 8
-
M. Nuruzzaman, Madhuri Gupta, Chengjun Zhang, Lei Wang, Weibo Xie, L. Xiong, Qifa Zhang, Xingming Lian (2008)
Sequence and expression analysis of the thioredoxin protein gene family in riceMolecular Genetics and Genomics, 280
-
Ying-Hua Chu, F. Lin, Yu-Jen Chou, K. Tsai, W. Kuo, I. Jääskeläinen (2013)
Effective Cerebral Connectivity during Silent Speech Reading Revealed by Functional Magnetic Resonance ImagingPLoS ONE, 8
-
Christine Didier, I. Kerblat, C. Drouet, A. Favier, J. Béani, Marie-Jeanne Richard (2001)
Induction of thioredoxin by ultraviolet-A radiation prevents oxidative-mediated cell death in human skin fibroblasts.Free radical biology & medicine, 31 5
-
Hezhong Dong, Weijiang Li, Wei Tang, Zhen-huai Li, Dongmei Zhang, Yuehua Niu (2006)
Yield, quality and leaf senescence of cotton grown at varying planting dates and plant densities in the Yellow River Valley of ChinaField Crops Research, 98
-
P. Rey, Ghislaine Pruvot, N. Bécuwe, F. Eymery, D. Rumeau, G. Peltier (2002)
A novel thioredoxin-like protein located in the chloroplast is induced by water deficit in Solanum tuberosum L. plants.The Plant journal : for cell and molecular biology, 13 1
-
A. Roychoudhury, D. Sengupta (2009)
The promoter-elements of some abiotic stress-inducible genes from cereals interact with a nuclear protein from tobaccoBiologia Plantarum, 53
-
K Bobik, TM Burch-Smith (2015)
Chloroplast signaling within, between and beyond cells chloroplast signaling within, between and beyond cellsFront Plant Sci, 6
-
I. Thormählen, Tobias Meitzel, Julia Groysman, Alexandra Öchsner, E. Roepenack-Lahaye, B. Naranjo, F. Cejudo, P. Geigenberger (2015)
Thioredoxin f 1 and NADPH-Dependent Thioredoxin Reductase C Have Overlapping Functions in Regulating Photosynthetic Metabolism and Plant Growth in Response to Varying Light Conditions 1 [ OPEN ] -
A Conesa, G Stefan (2009)
Blast2GO tutorial -
R Biłas, K Szafran, K Hnatuszko-konka (2016)
Cis-regulatory elements used to control gene expression inPlant Cell Tissue Organ Cult, 127
-
P. Geigenberger, I. Thormählen, Danilo Daloso, A. Fernie (2017)
The Unprecedented Versatility of the Plant Thioredoxin System.Trends in plant science, 22 3
-
R. Moore, M. Purugganan (2003)
The early stages of duplicate gene evolutionProceedings of the National Academy of Sciences of the United States of America, 100
-
K. Livak, Thomas Schmittgen
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2 2 DD C T Method -
H. Nakamura, Kazuhiro Nakamura, J. Yodoi (1997)
Redox regulation of cellular activation.Annual review of immunology, 15
-
Y. Meyer, J. Reichheld, F. Vignols (2005)
Thioredoxins inArabidopsis and other plantsPhotosynthesis Research, 86
-
Gurpreet Kaur, P. Pati (2016)
Analysis of cis-acting regulatory elements of Respiratory burst oxidase homolog (Rboh) gene families in Arabidopsis and rice provides clues for their diverse functionsComputational biology and chemistry, 62
- Publisher
- Springer Journals
- Copyright
- Copyright © 2018 by Springer Science+Business Media, LLC, part of Springer Nature
- Subject
- Life Sciences; Plant Sciences; Plant Genetics and Genomics; Plant Breeding/Biotechnology; Plant Ecology; Transgenics
- ISSN
- 1935-9756
- eISSN
- 1935-9764
- DOI
- 10.1007/s12042-018-9205-3
- Publisher site
- See Article on Publisher Site
Abstract
Thioredoxins (TRX) are small molecules of proteins that are present in all organisms. TRXs play an important role in diverse functions of plant growth and development. In this study, we performed genome-wide, characterization and expression levels of TRX gene family in cotton. A total of 150 GhTRX proteins were identified in upland cotton and classified into five subfamilies based on their domain compositions. Phylogenetic tree analysis divided TRX genes into seven subgroups. GhTRX genes covered all upland cotton chromosomes, with duplicated gene events. Ka/Ks ratio of three gene pairs was less than 1, suggesting purifying selection. The functions of GhTRX genes were studied using gene ontology, protein localization, and promoter analysis. Furthermore, six GhTRX genes were randomly selected to examine their expression level in cotton development and under various exogenous treatments. The genes showed high expressions in various tissues and at different stages of leaf senescence, also showed high expression under abscisic acid, ethylene, drought, and salinity. This study reveals the first report of TRX family genes in upland cotton. However further studies are needed to elucidate their specific functions in cotton plant.
Journal
Tropical Plant Biology – Springer Journals
Published: Jun 23, 2018