Access the full text.
Sign up today, get DeepDyve free for 14 days.
J. Frisvad, T. Larsen, U. Thrane, M. Meijer, J. Varga, R. Samson, K. Nielsen (2011)
Fumonisin and Ochratoxin Production in Industrial Aspergillus niger StrainsPLoS ONE, 6
D. Wibberg, M. Stadler, C. Lambert, B. Bunk, C. Spröer, C. Rückert, J. Kalinowski, R. Cox, E. Kuhnert (2020)
High quality genome sequences of thirteen Hypoxylaceae (Ascomycota) strengthen the phylogenetic family backbone and enable the discovery of new taxaFungal Diversity
Chirag Jain, Luis Rodriguez-R, A. Phillippy, K. Konstantinidis, S. Aluru (2017)
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundariesNature Communications, 9
K. Katoh, K. Misawa, K. Kuma, T. Miyata (2002)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.Nucleic acids research, 30 14
Beatriz Cardoso, Sara Silvério, L. Abrunhosa, J. Teixeira, L. Rodrigues (2017)
β-galactosidase from Aspergillus lacticoffeatus: A promising biocatalyst for the synthesis of novel prebiotics.International journal of food microbiology, 257
Y. Gherbawy, H. Elhariry, S. Kocsubé, A. Bahobial, Bahig Deeb, A. Altalhi, J. Varga, C. Vágvölgyi (2015)
Molecular characterization of black Aspergillus species from onion and their potential for ochratoxin A and fumonisin B2 production.Foodborne pathogens and disease, 12 5
B. Bluhm, C. Woloshuk (2005)
Amylopectin induces fumonisin B1 production by Fusarium verticillioides during colonization of maize kernels.Molecular plant-microbe interactions : MPMI, 18 12
M. Watanabe, K. Lee, K. Goto, S. Kumagai, Y. Sugita‐Konishi, Y. Hara-Kudo (2010)
Rapid and effective DNA extraction method with bead grinding for a large amount of fungal DNA.Journal of food protection, 73 6
Dayane Vanzela, F. Massi, A. Oliveira, M. Fungaro, D. Sartori (2020)
Isolation and Identification of Aspergillus Section Nigri, and Genotype Associated with Ochratoxin A and Fumonisin B2 Production in Garlic Marketed in BrazilCurrent Microbiology, 77
(2011)
Food analysis of ochratoxin A and fumonisins B1 and B2: state-of-the-art
J. Goris, K. Konstantinidis, J. Klappenbach, T. Coenye, P. Vandamme, J. Tiedje (2007)
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.International journal of systematic and evolutionary microbiology, 57 Pt 1
M. Alshahni, Tsuyoshi Yamada, Ayaka Yo, S. Murayama, M. Kuroda, Y. Hoshino, J. Ishikawa, Shinichi Watanabe, K. Makimura (2018)
Insight into the draft whole-genome sequence of the dermatophyte Arthroderma vanbreuseghemiiScientific Reports, 8
A. Oren, G. Garrity (2014)
Then and now: a systematic review of the systematics of prokaryotes in the last 80 yearsAntonie van Leeuwenhoek, 106
(2000)
Genotypic and phenotypic variability among black aspergilli. Integration of methods modern taxonomic for Penicillium and Aspergillus classification
MA Ismail (2017)
207Eur J Biol Res, 7
J Jurka (1996)
Origin and evolution of Alu repetitive elementsThe impact of short interspersed elements (SINEs) on the host genome
G. Perrone, G. Mulè, A. Susca, P. Battilani, A. Pietri, A. Logrieco (2006)
Ochratoxin A Production and Amplified Fragment Length Polymorphism Analysis of Aspergillus carbonarius, Aspergillus tubingensis, and Aspergillus niger Strains Isolated from Grapes in ItalyApplied and Environmental Microbiology, 72
N. Glass, G. Donaldson (1995)
Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetesApplied and Environmental Microbiology, 61
J. Gil-Serna, C. Vázquez, M. González-Jaén, B. Patiño (2018)
Wine Contamination with Ochratoxins: A Review, 4
G. Martin (1946)
The Genus Aspergillus.Science, 103 2665
J. Palumbo, T. O’keeffe, L. Gorski (2012)
Multiplex PCR analysis of fumonisin biosynthetic genes in fumonisin-nonproducing Aspergillus niger and A. awamori strainsMycologia, 105
P. Noonim, W. Mahakarnchanakul, K. Nielsen, J. Frisvad, R. Samson (2009)
Fumonisin B2 production by Aspergillus niger in Thai coffee beansFood Additives & Contaminants: Part A, 26
R. Maraia (1995)
The impact of short interspersed elements (SINEs) on the host genome
Mincheol Kim, Hyun-Seok Oh, Sang-Cheol Park, J. Chun (2014)
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes.International journal of systematic and evolutionary microbiology, 64 Pt 2
A. Esteban, M. Abarca, M. Bragulat, F. Cabañes (2006)
Study of the effect of water activity and temperature on ochratoxin A production by Aspergillus carbonarius.Food microbiology, 23 7
R. Samson, C. Visagie, J. Houbraken, Seung-Beom Hong, V. Hubka, C. Klaassen, G. Perrone, K. Seifert, Antonella Susca, J. Tanney, János Varga, S. Kocsubé, G. Szigeti, T. Yaguchi, J. Frisvad (2014)
Phylogeny, identification and nomenclature of the genus AspergillusStudies in Mycology, 78
RA Samson (2004)
45Stud Mycol, 50
S. Somma, G. Perrone, A. Logrieco (2012)
Diversity of black Aspergilli and mycotoxin risks in grape, wine and dried vine fruitsPhytopathologia Mediterranea, 51
C. Magnoli, A. Astoreca, L. Ponsone, María Fernández-Juri, S. Chiacchiera, A. Dalcero (2006)
Ochratoxin A and the occurrence of ochratoxin A‐producing black aspergilli in stored peanut seeds from Córdoba, ArgentinaJournal of the Science of Food and Agriculture, 86
S. Kurtz, A. Phillippy, A. Delcher, M. Smoot, Martin Shumway, C. Antonescu, S. Salzberg (2004)
Versatile and open software for comparing large genomesGenome Biology, 5
P. Noonim, W. Mahakarnchanakul, K. Nielsen, J. Frisvad, R. Samson (2008)
Isolation, identification and toxigenic potential of ochratoxin A-producing Aspergillus species from coffee beans grown in two regions of Thailand.International journal of food microbiology, 128 2
T. White (1990)
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, 18
J Varga, F Kevei, Z Hamari, B Tóth, J Téren, JH Croft, Z Kozakiewicz (2000)
Genotypic and phenotypic variability among black aspergilliIntegration of methods modern taxonomic for Penicillium and Aspergillus classification
A. Susca, R. Proctor, M. Morelli, M. Haidukowski, A. Gallo, A. Logrieco, A. Moretti (2016)
Variation in Fumonisin and Ochratoxin Production Associated with Differences in Biosynthetic Gene Content in Aspergillus niger and A. welwitschiae Isolates from Multiple Crop and Geographic OriginsFrontiers in Microbiology, 7
Xiaomin Han, Hongru Jiang, Jin Xu, Jing Zhang, Fengqin Li (2017)
Dynamic Fumonisin B2 Production by Aspergillus niger Intented Used in Food Industry in ChinaToxins, 9
Viola Schleusener, S. Homolka, S. Niemann, K. Fellenberg (2014)
Next-generation genotyping of Mycobacterium tuberculosis complex strains based on SNP-data
(2014)
Molecular genotyping of M. leprae using SNP and VNTR from an endemic region of the eastern part of India
J. Varga, S. Kocsubé, Katalin Suri, G. Szigeti, A. Szekeres, M. Varga, B. Tóth, T. Bartók (2010)
Fumonisin contamination and fumonisin producing black Aspergilli in dried vine fruits of different origin.International journal of food microbiology, 143 3
Gary Benson (1999)
Tandem repeats finder: a program to analyze DNA sequences.Nucleic acids research, 27 2
M. Gent, Marieke Bart, H. Heide, K. Heuvelman, T. Kallonen, Qiushui He, J. Mertsola, A. Advani, H. Hallander, K. Janssens, P. Hermans, F. Mooi (2011)
SNP-Based Typing: A Useful Tool to Study Bordetella pertussis PopulationsPLoS ONE, 6
J. Mogensen, J. Frisvad, U. Thrane, K. Nielsen (2010)
Production of Fumonisin B2 and B4 by Aspergillus niger on grapes and raisins.Journal of agricultural and food chemistry, 58 2
Hun Kim, C. Woloshuk (2008)
Role of AREA, a regulator of nitrogen metabolism, during colonization of maize kernels and fumonisin biosynthesis in Fusarium verticillioides.Fungal genetics and biology : FG & B, 45 6
Шандор Кочубе, Јанош Варга, Ђенђи Сигети, Николет Барањи, Каталин Шури, Бела Тот, Ева Толди, Тибор Барток, Акош Мештерхази (2013)
ASPERGILLUS SPECIES AS MYCOTOXIN PRODUCERS IN AGRICULTURAL PRODUCTS IN CENTRAL EUROPE
JI Pitt, AD Hocking (2009)
10.1007/978-0-387-92207-2Fungi and food spoilage
Seok-Hwan Yoon, Sung-min Ha, Jeongmin Lim, Soonjae Kwon, J. Chun (2017)
A large-scale evaluation of algorithms to calculate average nucleotide identityAntonie van Leeuwenhoek, 110
R. Proctor, R. Plattner, A. Desjardins, M. Busman, R. Butchko (2006)
Fumonisin production in the maize pathogen Fusarium verticillioides: genetic basis of naturally occurring chemical variation.Journal of agricultural and food chemistry, 54 6
M Sedmikova, H Reisnerova, Z Dufkova, I Barta (2001)
Potential hazard of simultaneous occurrence of aflatoxin B1 and ochratoxin AVet Med, 46
TJ White, S Bruns, S Lee, J Taylor (1990)
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogeneticsPcr Protoc A Guide Methods Appl, 1
E. Thomas, Suman Pakala, N. Fedorova, W. Nierman, M. Cubeta (2012)
Triallelic SNP-mediated genotyping of regenerated protoplasts of the heterokaryotic fungus Rhizoctonia solani.Journal of biotechnology, 158 3
J. Pitt, A. Hocking (1987)
Fungi and Food SpoilageFungi and Food Spoilage
H. Pel, J. Winde, D. Archer, P. Dyer, G. Hofmann, P. Schaap, G. Turner, R. Vries, R. Albang, K. Albermann, M. Andersen, J. Bendtsen, J. Benen, M. Berg, Stefaan Breestraat, M. Caddick, R. Contreras, M. Cornell, P. Coutinho, E. Danchin, A. Debets, P. Dekker, P. Dijck, A. Dijk, L. Dijkhuizen, A. Driessen, C. d’Enfert, Steven Geysens, C. Goosen, G. Groot, P. Groot, T. Guillemette, B. Henrissat, M. Herweijer, J. Hombergh, C. Hondel, R. Heijden, R. Kaaij, F. Klis, Harrie Kools, C. Kubicek, P. Kuyk, J. Lauber, Xin Lu, M. Maarel, R. Meulenberg, H. Menke, M. Mortimer, J. Nielsen, S. Oliver, M. Olsthoorn, K. Pál, N. Peij, A. Ram, U. Rinas, J. Roubos, C. Sagt, M. Schmoll, Jibin Sun, D. Ussery, J. Varga, W. Vervecken, P. Vondervoort, H. Wedler, H. Wösten, A. Zeng, A. Ooyen, J. Visser, H. Stam (2007)
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88Nature Biotechnology, 25
Daren Brown, R. Butchko, M. Busman, R. Proctor (2007)
The Fusarium verticillioides FUM Gene Cluster Encodes a Zn(II)2Cys6 Protein That Affects FUM Gene Expression and Fumonisin ProductionEukaryotic Cell, 6
M. Taniwaki, J. Pitt, A. Teixeira, B. Iamanaka (2003)
The source of ochratoxin A in Brazilian coffee and its formation in relation to processing methods.International journal of food microbiology, 82 2
A. Susca, R. Proctor, R. Butchko, M. Haidukowski, G. Stea, A. Logrieco, A. Moretti (2014)
Variation in the fumonisin biosynthetic gene cluster in fumonisin-producing and nonproducing black aspergilli.Fungal genetics and biology : FG & B, 73
G. Perrone, G. Stea, F. Epifani, J. Varga, J. Frisvad, R. Samson (2011)
Aspergillus niger contains the cryptic phylogenetic species A. awamori.Fungal biology, 115 11
M. Ismail (2017)
Incidence and significance of black aspergilli in agricultural commodities: a review, with a key to all species accepted to-dateEuropean Journal of Biological Research, 7
Imchang Lee, Yeong Kim, Sang-Cheol Park, J. Chun (2016)
OrthoANI: An improved algorithm and software for calculating average nucleotide identity.International journal of systematic and evolutionary microbiology, 66 2
Seung-Beom Hong, O. Yamada, R. Samson (2013)
Taxonomic re-evaluation of black koji moldsApplied Microbiology and Biotechnology, 98
A. Esteban, M. Abarca, M. Bragulat, F. Cabañes (2004)
Effects of temperature and incubation time on production of ochratoxin A by black aspergilli.Research in microbiology, 155 10
W. Kent (2002)
BLAT--the BLAST-like alignment tool.Genome research, 12 4
A. Gallo, Benjamin Knox, K. Bruno, M. Solfrizzo, S. Baker, G. Perrone (2014)
Identification and characterization of the polyketide synthase involved in ochratoxin A biosynthesis in Aspergillus carbonarius.International journal of food microbiology, 179
M. Abarca, M. Bragulat, G. Castellá, F. Cabañes (2019)
Impact of some environmental factors on growth and ochratoxin A production by Aspergillus niger and Aspergillus welwitschiae.International journal of food microbiology, 291
F. Fanelli, M. Schmidt-Heydt, M. Haidukowski, R. Geisen, A. Logrieco, G. Mulè (2012)
Influence of light on growth, conidiation and the mutual regulation of fumonisin B2 and ochratoxin A biosynthesis by Aspergillus nigerWorld Mycotoxin Journal, 5
F. Massi, D. Sartori, Larissa Ferranti, B. Iamanaka, M. Taniwaki, M. Vieira, M. Fungaro (2016)
Prospecting for the incidence of genes involved in ochratoxin and fumonisin biosynthesis in Brazilian strains of Aspergillus niger and Aspergillus welwitschiae.International journal of food microbiology, 221
F. Cabañes, M. Bragulat (2018)
Black aspergilli and ochratoxin A-producing species in foodsCurrent Opinion in Food Science
Seung-Beom Hong, H. Cho, H. Shin, J. Frisvad, R. Samson (2006)
Novel Neosartorya species isolated from soil in Korea.International journal of systematic and evolutionary microbiology, 56 Pt 2
M. Richter, R. Rosselló-Móra (2009)
Shifting the genomic gold standard for the prokaryotic species definitionProceedings of the National Academy of Sciences, 106
R. Samson, J. Houbraken, A. Kuijpers, J. Frank, J. Frisvad (2004)
New ochratoxin A or sclerotium producing species in Aspergillus section Nigri.Studies in Mycology, 50
A. Domijan (2012)
Fumonisin B1: A Neurotoxic Mycotoxin / Fumonizin B1: Neurotoksični Mikotoksin, 63
M. Abarca, F. Accensi, J. Cano, F. Cabañes (2004)
Taxonomy and significance of black aspergilliAntonie van Leeuwenhoek, 86
John Taylor, D. Jacobson, S. Kroken, T. Kasuga, D. Geiser, D. Hibbett, M. Fisher (2000)
Phylogenetic species recognition and species concepts in fungi.Fungal genetics and biology : FG & B, 31 1
E. Petzinger, A. Weidenbach (2002)
Mycotoxins in the food chain: the role of ochratoxinsLivestock Production Science, 76
A. Stamatakis (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesBioinformatics, 30
W. Marasas, R. Riley, Katherine Hendricks, V. Stevens, T. Sadler, J. Waes, S. Missmer, Julio Cabrera, O. Torres, W. Gelderblom, J. Allegood, Carolina Martínez, J. Maddox, J. Miller, L. Starr, M. Sullards, A. Roman, K. Voss, E. Wang, A. Merrill (2004)
Fumonisins disrupt sphingolipid metabolism, folate transport, and neural tube development in embryo culture and in vivo: a potential risk factor for human neural tube defects among populations consuming fumonisin-contaminated maize.The Journal of nutrition, 134 4
Hebert Figueredo, V. Gonçalves, V. Godinho, D. Lopes, F. Oliveira, L. Rosa (2019)
Diversity and ecology of cultivable fungi isolated from the thermal soil gradients in Deception Island, AntarcticaExtremophiles, 24
M. Sedmíková, H. Reisnerová, Z. Dufková, I. Bárta, F. Jílek (2018)
Potential hazard of simultaneous occurrence of aflatoxin B-1 and ochratoxin AVeterinarni Medicina, 46
J. Varga, J. Frisvad, S. Kocsubé, B. Brankovics, B. Tóth, G. Szigeti, R. Samson (2011)
New and revisited species in Aspergillus section NigriStudies in Mycology, 69
Schuster E., Dunn-Coleman N., Frisvad J., P. Dijck (2002)
On the safety of Aspergillus niger – a reviewApplied Microbiology and Biotechnology, 59
J. Gil-Serna, M. García-Díaz, C. Vázquez, M. González-Jaén, B. Patiño (2019)
Significance of Aspergillus niger aggregate species as contaminants of food products in Spain regarding their occurrence and their ability to produce mycotoxins.Food microbiology, 82
J. Frisvad, J. Smedsgaard, R. Samson, T. Larsen, U. Thrane (2007)
Fumonisin B2 production by Aspergillus niger.Journal of agricultural and food chemistry, 55 23
Based on entire genome sequencing, this study focused on the classification of Aspergillus niger aggregation species and investigated their potential for fumonisin B2 (FB2) and ochratoxin A (OTA) production. In the current study, 22 strains were used, namely 17 A. niger strains, four A. welwitschiae strains, and one A. lacticoffeatus (a synonym of A. niger) strain. Traditional multigene phylogenetic analysis, average nucleotide identity analysis (ANI), and the whole-genome single-nucleotide polymorphism (SNP) analyses were used to reconfirm the taxonomic status of A. niger, A. welwitschiae, and A. lacticoffeatus. The ability of A. niger to produce FB2 and OTA on five culture substrates was determined, and the association between FB2 and OTA gene clusters and toxin-producing abilities was explored. The results revealed that the ANI method could distinguish A. niger from A. welwitschiae, with an ANI value of < 98%. The SNP-based phylogenetic analysis suggested that A. niger and A. welwitschiae were two independent phylogenetic species. The ANI, SNP, and multigene phylogenetic analysis supported previous findings that A. lacticoffeatus was a synonymous species of A. niger. Aspergillus niger strains exhibited the varied potential of producing FB2 and OTA on different culture media. The A. niger genome sequence analysis revealed no significant difference in fumonisin gene clusters between FB2-nonproducing isolates and FB2-producing isolates, and the integrity of the ochratoxin biosynthesis genes cluster was clearly associated with OTA production. In conclusion, gene sequencing can be useful in assessing A. niger’s ability to produce OTA, but it cannot reliably predict its ability to produce FB2.
Current Microbiology – Springer Journals
Published: Jul 1, 2022
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.