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B. Epperson (2000)
Spatial genetic structure and non-equilibrium demographics within plant populations.Plant Species Biology, 15
J. Hamrick, D. Murawski, J. Nason (1993)
The influence of seed dispersal mechanisms on the genetic structure of tropical tree populationsVegetatio, 107
Katrina Dlugosch, I. Parker (2008)
Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductionsMolecular Ecology, 17
N. Colpaert, Stephen Cavers, E. Bandou, Henri Caron, G. Gheysen, Aj Lowe (2005)
Sampling Tissue for DNA Analysis of Trees: Trunk Cambium as an Alternative to Canopy LeavesSilvae Genetica, 54
M. Lemes, R. Gribel, J. Proctor, D. Grattapaglia (2003)
Population genetic structure of mahogany (Swietenia macrophylla King, Meliaceae) across the Brazilian Amazon, based on variation at microsatellite loci: implications for conservationMolecular Ecology, 12
G. White, D. Boshier, W. Powell (1999)
Genetic variation within a fragmented population of Swietenia humilis Zucc.Molecular Ecology, 8
B. Finegan (1996)
Pattern and process in neotropical secondary rain forests: the first 100 years of succession.Trends in ecology & evolution, 11 3
M. Slatkin (1985)
Gene Flow in Natural PopulationsAnnual Review of Ecology, Evolution, and Systematics, 16
I. Litrico, J. Ronfort, R. Verlaque, J. Thompson (2005)
Spatial structure of genetic variation and primary succession in the pioneer tree species Antirhea borbonica on La RéunionMolecular Ecology, 14
B. Hardesty, S. Hubbell, E. Bermingham (2006)
Genetic evidence of frequent long-distance recruitment in a vertebrate-dispersed tree.Ecology letters, 9 5
E. Álvarez-Buylla, A. Garay (1994)
POPULATION GENETIC STRUCTURE OF CECROPIA OBTUSIFOLIA, A TROPICAL PIONEER TREE SPECIESEvolution, 48
K. Bawa, D. Perry, J. Beach (1985)
Reproductive biology of tropical lowland rain forest trees. I: Sexual systems and incompatibility mechanismsAmerican Journal of Botany, 72
B. Finegan (1992)
The management potential of neotropical secondary lowland rain forestForest Ecology and Management, 47
B. Degen, R. Petit, A. Kremer (2001)
SGS--Spatial Genetic Software: a computer program for analysis of spatial genetic and phenotypic structures of individuals and populations.The Journal of heredity, 92 5
S. Cavers, Bernd Degen, H. Caron, M. Lemes, Rogério Margis, Rogério Margis, Fabiano Salgueiro, Andrew Lowe (2005)
Optimal sampling strategy for estimation of spatial genetic structure in tree populationsHeredity, 95
U. Sezen, R. Chazdon, K. Holsinger (2005)
Genetic Consequences of Tropical Second-Growth Forest RegenerationScience, 307
S. Harris (1995)
Systematics and randomly amplified polymorphic DNA in the genusLeucaena (Leguminosae, Mimosoideae)Plant Systematics and Evolution, 197
O. Hardy, X. Vekemans (2002)
spagedi: a versatile computer program to analyse spatial genetic structure at the individual or population levelsMolecular Ecology Notes, 2
B. Weir, C. Cockerham (1984)
ESTIMATING F‐STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTUREEvolution, 38
B. Finegan, Diego Delgado (2000)
Structural and Floristic Heterogeneity in a 30‐Year‐Old Costa Rican Rain Forest Restored on Pasture Through Natural Secondary SuccessionRestoration Ecology, 8
B. Finegan, M. Camacho, N. Zamora (1999)
Diameter increment patterns among 106 tree species in a logged and silviculturally treated Costa Rican rain forestForest Ecology and Management, 121
DH Boucher, MA Mallona (1997)
Recovery of the rain forest tree Vochysia ferruginea over 5 years following Hurricane Joan in Nicaragua: a preliminary population projection matrixFor Ecol Manag, 91
B. Hardesty, B. Hardesty, C. Dick, C. Dick, A. Kremer, S. Hubbell, S. Hubbell, E. Bermingham (2005)
Spatial genetic structure of Simarouba amara Aubl. (Simaroubaceae), a dioecious, animal-dispersed Neotropical tree, on Barro Colorado Island, PanamaHeredity, 95
A. Lowe, D. Boshier, M. Ward, C. Bacles, C. Bacles, C. Navarro (2005)
Genetic resource impacts of habitat loss and degradation; reconciling empirical evidence and predicted theory for neotropical treesHeredity, 95
(1998)
POPGENE , version 2. Distributed by the author. http://www.ualberta.ca/~fyeh/fyeh
Maurizio Rossetto, Rebecca Jones, Rebecca Jones, John Hunter (2004)
Genetic effects of rainforest fragmentation in an early successional tree (Elaeocarpus grandis)Heredity, 93
C. Dick, Gabriela Etchelecu, F. Austerlitz (2003)
Pollen dispersal of tropical trees (Dinizia excelsa: Fabaceae) by native insects and African honeybees in pristine and fragmented Amazonian rainforestMolecular Ecology, 12
Jinliang Wang (2002)
An estimator for pairwise relatedness using molecular markers.Genetics, 160 3
John Wilson, E. Dormontt, P. Prentis, A. Lowe, D. Richardson (2009)
Something in the way you move: dispersal pathways affect invasion success.Trends in ecology & evolution, 24 3
J. Goudet (2001)
FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Updated from Goudet (1995)
S. Cavers, C. Navarro, P. Hopkins, R. Ennos, A. Lowe (2005)
Regional and Population-scale Influences on Genetic Diversity Partitioning within Costa Rican Populations of the Pioneer Tree Vochysia ferruginea MartSilvae Genetica, 54
M. Céspedes, M. Gutiérrez, N. Holbrook, O. Rocha (2003)
Restoration of genetic diversity in the dry forest tree Swietenia macrophylla (Meliaceae) after pasture abandonment in Costa RicaMolecular Ecology, 12
B Herrera, JJ Campos, B Finegan, A Alvarado (1999)
Factors affecting site productivity of a Costa Rican secondary rain forest in relation to Vochysia ferruginea, a commercially valuable canopy tree speciesFor Ecol Manag, 118
DH Boucher, JH Vandermeer, MA Mallona, N Zamora, I Perfecto (1994)
Resistance and resilience in a directly regenerating rainforest: Nicaraguan trees of the Vochysiaceae after Hurricane JoanFor Ecol Manag, 68
FA Jones, SP Hubbell (2006)
Demographic spatial structure of the neotropical tree, Jacaranda copaiaMol Ecol, 15
M. Raymond, F. Rousset (1995)
GENEPOP (version 1.2): population genetic software for exact tests and ecumenicism
Douglas Boucher, M. Mallona (1997)
Recovery of the rain forest tree Vochysia ferruginea over 5 years following Hurricane Joan in Nicaragua: a preliminary population projection matrixForest Ecology and Management, 91
X. Vekemans, O. Hardy (2004)
New insights from fine‐scale spatial genetic structure analyses in plant populationsMolecular Ecology, 13
B Finegan, M Camacho, N Zamora (1999)
Diameter increment patterns among 106 tree species in a logged and silviculturally treated Costa Rican rain forestFor Ecol Manag, 121
M. Ward, C. Dick, C. Dick, R. Gribel, A. Lowe (2005)
To self, or not to self… A review of outcrossing and pollen-mediated gene flow in neotropical treesHeredity, 95
B. Finegan, M. Camacho (1999)
Stand dynamics in a logged and silviculturally treated Costa Rican rain forest, 1988-1996Forest Ecology and Management, 121
C. Dutech, J. Seiter, P. Pétronelli, H. Joly, P. Jarne (2002)
Evidence of low gene flow in a neotropical clustered tree species in two rainforest stands of French GuianaMolecular Ecology, 11
B. Herrera, B. Finegan (1997)
Substrate conditions, foliar nutrients and the distributions of two canopy tree species in a Costa Rican secondary rain forestPlant and Soil, 191
(1993)
Trees and Seeds from the Neotropics
R. Sokal, N. Oden (1978)
Spatial autocorrelation in biology: 1. MethodologyBiological Journal of The Linnean Society, 10
F. Jones, S. Hubbell (2006)
Demographic spatial genetic structure of the Neotropical tree, Jacaranda copaiaMolecular Ecology, 15
(2005)
Genetic resource loss following habitat fragmentation and degradation; reconciling predicted theory with empirical evidence
D. Levin, H. Kerster (1974)
Gene Flow in Seed PlantsEvolutionary Biology-new York, 7
A. Kremer, H. Caron, S. Cavers, N. Colpaert, G. Gheysen, R. Gribel, M. Lemes, A. Lowe, R. Margis, R. Margis, C. Navarro, F. Salgueiro (2005)
Monitoring genetic diversity in tropical trees with multilocus dominant markersHeredity, 95
A. Lowe, B. Jourde, P. Breyne, N. Colpaert, C. Navarro, Julia Wilson, S. Cavers (2003)
Fine-scale genetic structure and gene flow within Costa Rican populations of mahogany (Swietenia macrophylla)Heredity, 90
F. Jones, J. Hamrick, C. Peterson, E. Squiers (2006)
Inferring colonization history from analyses of spatial genetic structure within populations of Pinus strobus and Quercus rubraMolecular Ecology, 15
C. Latouche-Hallé, A. Ramboer, E. Bandou, H. Caron, A. Kremer (2003)
Nuclear and chloroplast genetic structure indicate fine-scale spatial dynamics in a neotropical tree populationHeredity, 91
M Lemes, R Gribel, J Proctor, D Grattapaglia (2003)
Population genetic structure of mahogany (Swietenia macrophylla King, Meliaceae) across the Brazilian Amazon: implications for conservationMol Ecol, 12
D. Mccauley (1991)
Genetic consequences of local population extinction and recolonization.Trends in ecology & evolution, 6 1
C. Dick, Kobinah Abdul-Salim, E. Bermingham (2003)
Molecular Systematic Analysis Reveals Cryptic Tertiary Diversification of a Widespread Tropical Rain Forest TreeThe American Naturalist, 162
R. Collevatti, D. Grattapaglia, J. Hay (2001)
Population genetic structure of the endangered tropical tree species Caryocar brasiliense, based on variability at microsatellite lociMolecular Ecology, 10
D. Boucher, J. Vandermeer, M. Mallona, N. Zamora, I. Perfecto (1994)
Resistance and resilience in a directly regenerating rainforest: Nicaraguan trees of the Vochysiaceae after Hurricane JoanForest Ecology and Management, 68
S. Davies (2006)
The population genetic consequences of gene flow during colonisation and regeneration of forest trees
C. Dutech, L. Maggia, C. Tardy, H. Joly, P. Jarne (2003)
TRACKING A GENETIC SIGNAL OF EXTINCTION‐RECOLONIZATION EVENTS IN A NEOTROPICAL TREE SPECIES: VOUACAPOUA AMERICANA AUBLET IN FRENCH GUIANAEvolution, 57
M. Nei (1987)
Molecular Evolutionary Genetics
B. Herrera, J. Campos, B. Finegan, A. Alvarado (1999)
Factors affecting site productivity of a Costa Rican secondary rain forest in relation to Vochysia ferruginea, a commercially valuable canopy tree speciesForest Ecology and Management, 118
P. Vos, R. Hogers, M. Bleeker, M. Reijans, Theo Lee, Miranda Hornes, A. Friters, J. Pot, J. Paleman, M. Kuiper, M. Zabeau (1995)
AFLP: a new technique for DNA fingerprinting.Nucleic acids research, 23 21
Aldrich, Hamrick (1998)
Reproductive dominance of pasture trees in a fragmented tropical forest mosaicScience, 281 5373
P. Prentis, D. Sigg, S. Raghu, K. Dhileepan, A. Pavasovic, A. Lowe (2009)
Understanding invasion history: genetic structure and diversity of two globally invasive plants and implications for their managementDiversity and Distributions, 15
B Finegan, M Camacho, N Zamora (1999)
Stand Dynamics in a logged and silviculturally treated Costa Rican rain forest 1988–1996For Ecol Manag, 121
A. Lowe, W. Goodall‐Copestake, H. Caron, A. Kremer, S. Decroocq (2002)
A set of polymorphic microsatellites for Vochysia ferruginea, a promising tree for land reclamation in the NeotropicsMolecular Ecology Notes, 2
B. Degen, H. Caron, E. Bandou, L. Maggia, M. Chevallier, A. Leveau, A. Kremer (2001)
Fine-scale spatial genetic structure of eight tropical tree species as analysed by RAPDsHeredity, 87
B. Weir (1988)
Molecular Evolutionary Genetics. Masatoshi NeiThe Quarterly Review of Biology, 63
F. Austerlitz, S. Mariette, N. Machon, P. Gouyon, B. Godelle, B. Godelle (2000)
Effects of colonization processes on genetic diversity: differences between annual plants and tree species.Genetics, 154 3
B Finegan (1992)
The management potential of neotropical secondary lowland rainforestFor Ecol Manag, 47
R. Petit, A. Hampe (2006)
Some Evolutionary Consequences of Being a TreeAnnual Review of Ecology, Evolution, and Systematics, 37
Deforestation and abandonment of neotropical agricultural land has led to rapid exploitation by pioneer species. As recolonised populations may be founded by a limited number of individuals, there is significant potential for genetic bottlenecks. Previous studies of pioneer tree dynamics have failed to consider population density interactions (by sampling populations with different densities) and the multigenerational consequences of recolonisation. In this paper we examine the genetic outcomes of a clearance/recolonisation regime for a Costa Rican long-lived pioneer species, Vochysia ferruginea, at a series of sites with different densities and across multi-generational cohorts (old growth forest, secondary forest and seedlings) using variation for amplified fragment length polymorphism (AFLPs) and single sequence repeats (SSRs, microsatellites). A clearance/recolonisation phase was found to significantly increase fine-scale genetic structuring (average intensity of spatial genetic structure, Sp [SSR] = 0.0358) compared to old growth forest (Sp = 0.0126), and significantly reduces genetic diversity (Shannon’s index [AFLP] = 0.202 and 0.271–0.355 for other forest histories following density correction), which compounds over generations (e.g. at Tirimbina: old growth forest, allelic richness, RT [SSR] = 8.86; secondary forest RT = 7.95; seedlings RT = 4.76). Spatial structuring of closely related individuals suggests that V. ferruginea colonises sites via early invaders, which establish patches with half sib relationship. The variability observed between cohorts for genetic differentiation and inbreeding coefficients suggests that the presence of remnant trees can have an important impact on the genetic make up of recolonised populations. One main concern from these results is that if secondary forest blocks harbour reduced genetic diversity and persist in the landscape, then species like V. ferruginea may be forced into a downward spiral of diversity loss if old growth remnants, which harbour higher diversity, are cleared and secondary blocks are used as reforestation sources.
Tropical Plant Biology – Springer Journals
Published: Feb 24, 2010
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