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Doubling up on the Fly: NeuroMorpho.Org Meets Big Data

Doubling up on the Fly: NeuroMorpho.Org Meets Big Data Neuroinform (2015) 13:127–129 DOI 10.1007/s12021-014-9257-y NEWS ITEM Sumit Nanda & M. Mowafak Allaham & Maurizio Bergamino & Sridevi Polavaram & Rubén Armañanzas & Giorgio A. Ascoli & Ruchi Parekh Published online: 10 January 2015 Springer Science+Business Media New York 2014 NeuroMorpho.Org (RRID:nif-0000-00006) is a central- rons. The public posting of all image stacks and corre- ized repository of neuronal reconstructions hosting data sponding digital tracings on flycircuit.tw after an addi- from a variety of species, brain regions, and experimental tional year constituted the first (and so far only) success conditions. This resource aims to provide dense coverage in high-throughput digital morphology. of available data by including all digital tracings de- Although flycircuit.tw (RRID:nif-0000-07738) recon- scribed in peer-reviewed publications that the authors are structions are beginning to enable new analysis and dis- 2 8 willing to share. Although most reconstructions to date coveries by independent research groups, these data were are acquired manually or semi-manually, the transition to posted in a commercial format (vsg3d.com/amira/ quasi-automated methods is widely considered as neces- skeletonization) and lacked useful information such as sary for long-term progress. The 2010 DIADEM compe- the somatic brain region. Following the open invitation tition (DiademChallenge.org, RRID:nif-0000-23194) of flycircuit.tw to http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Neuroinformatics Springer Journals

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Publisher
Springer Journals
Copyright
Copyright © 2014 by Springer Science+Business Media New York
Subject
Biomedicine; Neurosciences; Bioinformatics; Computational Biology/Bioinformatics; Computer Appl. in Life Sciences; Neurology
ISSN
1539-2791
eISSN
1559-0089
DOI
10.1007/s12021-014-9257-y
pmid
25576225
Publisher site
See Article on Publisher Site

Abstract

Neuroinform (2015) 13:127–129 DOI 10.1007/s12021-014-9257-y NEWS ITEM Sumit Nanda & M. Mowafak Allaham & Maurizio Bergamino & Sridevi Polavaram & Rubén Armañanzas & Giorgio A. Ascoli & Ruchi Parekh Published online: 10 January 2015 Springer Science+Business Media New York 2014 NeuroMorpho.Org (RRID:nif-0000-00006) is a central- rons. The public posting of all image stacks and corre- ized repository of neuronal reconstructions hosting data sponding digital tracings on flycircuit.tw after an addi- from a variety of species, brain regions, and experimental tional year constituted the first (and so far only) success conditions. This resource aims to provide dense coverage in high-throughput digital morphology. of available data by including all digital tracings de- Although flycircuit.tw (RRID:nif-0000-07738) recon- scribed in peer-reviewed publications that the authors are structions are beginning to enable new analysis and dis- 2 8 willing to share. Although most reconstructions to date coveries by independent research groups, these data were are acquired manually or semi-manually, the transition to posted in a commercial format (vsg3d.com/amira/ quasi-automated methods is widely considered as neces- skeletonization) and lacked useful information such as sary for long-term progress. The 2010 DIADEM compe- the somatic brain region. Following the open invitation tition (DiademChallenge.org, RRID:nif-0000-23194) of flycircuit.tw to

Journal

NeuroinformaticsSpringer Journals

Published: Jan 10, 2015

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