Access the full text.
Sign up today, get DeepDyve free for 14 days.
Loading next page...
/lp/springer-journals/dartseq-molecular-markers-for-resistance-to-phytophthora-cinnamomi-in-BFxQwndCOF
References (56)
-
Y Cohen, U Gisi, T Niderman (1993)
Local and systemic protection against Phytophthora infestans induced in potato and tomato plants by jasmonic acid and jasmonic acid methyl esterPhytopathology, 83
-
KU Torii (2004)
Leucine-rich repeat receptor kinases in plants: structure, function and signal transduction pathwaysInt Rev Cytol, 234
-
T Mengiste (2012)
Plant immunity to necrotrophsAnnu Rev Phytopathol, 50
-
A Sanchez-Vallet, JR Mesters, BPHJ Thomma (2014)
The battle for chitin recognition in plant microbe interactionsFEMS Microb Reviews, 39
-
DDF Williams, H Fleisch (1993)
Historical review of pineapple breeding in HawaiiActa Hortic, 334
-
CH Acosta-Muniza, L Escobar-Tovarb, S Valdes-Rodríguezc, S Fernández-Paviad, LJ Arias Saucedob, M Cruz Espindola Barquerae, MA Gómez Limb (2012)
Identification of avocado (Persea americana) root proteins induced by infection with the oomycete Phytophthora cinnamomi using a proteomic approachPhysiol Plant, 144
-
JT Tippett, SR Shea, TC Hill, BL Shearer (1983)
Development of lesions caused by Phytophthora cinnamomi in the secondary phloem of Eucalyptus marginataAustralian J Bot, 31
-
B Courtois, A Audebert, A Dardou, S Roques, T Ghneim-Herrera, G Droc, J Frouin, L Rouan, E Goze, A Kilian, N Ahmadi, M Dingkuhn (2013)
Genome-wide association mapping of root traits in a japonica rice panelPLoS One, 8
-
L Du, GM Sun, X Zhang, Y Liu, W Prinyawiwatkul, Z Xu, Y Shen (2016)
Comparisons and correlations of phenolic profiles and anti-oxidant activities of seventeen varieties of pineappleFood Sci Biotechno, 25
-
Y Jing, H Sun, W Yuan, Y Wang, Q Li, Y Liu, Y Li, W Qian (2016)
SUVH2 and SUVH9 couple two essential steps for transcriptional gene silencing in ArabidopsisMol Plant, 9
-
JM Yu, G Pressoir, WH Briggs, IV Bi, M Yamasaki, JF Doebley, MD McMullen, BS Gaut, DM Nielsen, JB Holland, S Kresovich, ES Buckler (2006)
A unified mixed-model method for association mapping that accounts for multiple levels of relatednessNat Genet, 38
-
RW Dempsey, A Merchant, M Tausz (2012)
Differences in ascorbate and glutathione levels as indicators of resistance and susceptibility in Eucalyptus trees infected with Phytophthora cinnamomiTree Physiol, 32
-
DJ Kliebenstein, HC Rowe (2008)
Ecological costs of biotrophic versus necrotrophic pathogen resistance, the hypersensitive response and signal transductionPlant Sci, 174
-
DM Cahill, IJ Bennett, JA McComb (1993)
Mechanisms of resistance to Phytophthora cinnamomi in clonal, micropropagated Eucalyptus marginataPlant Pathol, 42
-
Z Zhao, SM Assmann (2011)
The glycolytic enzyme, phosphoglycerate mutase, has critical roles in stomatal movement, vegetative growth, and pollen production in Arabidopsis thalianaJ Exp Bot, 62
-
HM Way, RG Birch, JM Manners (2011)
A comparison of individual and combined L-phenylalanine ammonia lyase and cationic peroxidase transgenes for engineering resistance in tobacco to necrotrophic pathogensPlant Biotechnol Rep, 5
-
JB Endelman (2011)
Ridge regression and other kernels for genomic selection with R package rrBLUPPlant Genome, 4
-
CB Taylor, PA Bariola, SB Delcardayr, RT Raines, PJ Green (1993)
RNS2: a senescence-associated RNase of Arabidopsis that diverged from the S-RNases before speciationProceed Nat Academy of Sciences United States of America, 90
-
SJ Lee, JKC Rose (2010)
Mediation of the transition from biotrophy to necrotrophy in hemibiotrophic plant pathogens by secreted effector proteinsPlant Signal Behav, 5
-
R Ming, R VanBuren, CM Wai, HB Tang, MC Schatz, JE Bowers, E Lyons, ML Wang, J Chen, E Biggers, JS Zhang, LX Huang, LM Zhang, WJ Miao, J Zhang, ZY Ye, CY Miao, ZC Lin, H Wang, HY Zhou, WC Yim, HD Priest, CF Zheng, M Woodhouse, PP Edger, R Guyot, HB Guo, H Guo, GY Zheng, R Singh, A Sharma, XJ Min, Y Zheng, H Lee, J Gurtowski, FJ Sedlazeck, A Harkess, MR McKain, ZY Liao, JP Fang, J Liu, XD Zhang, Q Zhang, WC Hu, Y Qin, K Wang, LY Chen, N Shirley, YR Lin, LY Liu, AG Hernandez, CL Wright, V Bulone, GA Tuskan, K Heath, F Zee, PH Moore, R Sunkar, JH Leebens-Mack, T Mockler, JL Bennetzen, M Freeling, D Sankoff, AH Paterson, XG Zhu, XH Yang, JAC Smith, JC Cushman, RE Paull, QY Yu (2015)
The pineapple genome and the evolution of CAM photosynthesisNat Genet, 47
-
N Sousa, JD Carlier, T Santo, J Leitao (2013)
An integrated genetic map of pineapple (Ananas comosus (L.) Merr.)Scientia Hort, 157
-
PJ Bradbury, Z Zhang, DE Kroon, TM Casstevens, R Yogesh, ES Buckler (2007)
TASSEL: software for association mapping of complex traits in diverse samplesBioinformatics, 23
-
D-W Chen, GA Zentmyer (1970)
Production of sporangia by Phytophthora cinnamomi in axenic cultureMycologia, 62
-
X Zhang, P Liang, R Ming (2016)
Genome-wide identification and characterization of nucleotide-binding site (NBS) resistance genes in pineappleTropical Plant Biol, 9
-
A Kilian, G Sanewski, L Ko (2016)
The application of DArTseq technology to pineappleActa Hort (ISHS), 1111
-
D Cahill, N Legge, B Grant, G Weste (1989)
Cellular and histological changes induced by Phytophthora cinnamomi in a group of plant species ranging from fully susceptible to fully resistantPhytopathology, 79
-
W Chen, Y Qiuming, BP Gunvant, A Gaurav, KD Rupesh, L Lin, B Wang, Y Wang, SJ Prince, L Song, D Xu, YC An, B Valliyadan, RK Varshney, HT Nguyen (2016)
Identification and comparative analysis of differential gene expression in soybean leaf tissue under drought and flooding stress revealed by RNA-SeqFrontiers in Plant Sci, 7
-
MY Galperin, EV Koonin (2004)
Conserved hypothetical proteins: prioritization of targets for experimental studyNucleic Acids Res, 32
-
JM Anderson, KG Pegg, C Scott (2012)
Phosphonate applied as a pre-plant dip controls Phytophthora cinnamomi root and heart rot in susceptible pineapple hybridsAustralasian Plant Pathol, 41
-
G Ebadzad, A Cravador (2014)
Quantitative RT-PCR analysis of differentially expressed genes in Quercus suber in response to Phytophthora cinnamomi infectionSpring, 3
-
HG Kang, H Woo Choi, S Einem, P Manosalva, K Ehlers, PP Liu, SV Buxa, M Moreau, HG Mang, P Kachroo, KH Kogel, DF Klessig (2012)
CRT1 is a nuclear-translocated MORC endonuclease that participates in multiple levels of plant immunityNat Commun, 3
-
J Glazebrook (2005)
Contrasting mechanisms of defence against biotrophic and necrotrophic pathogensAnnu Rev Phytopathol, 43
-
CJ Harris, D Husmann, W Liu, FE Kasmi, H Wang, A Papikian, WA Pastor, G Moissard, AA Vashisht, JL Dangl, JA Wohlschlegel, SE Jacobsen (2016)
Arabidopsis AtMORC4 and AtMORC7 form nuclear bodies and repress a large number of protein-coding genesPLoS Genet, 12
-
JA Allardyce, JE Rookes, HIH Hussain, DM Cahill (2013)
Transcriptional profiling of Zea mays roots reveals roles for jasmonic acid and terpenoids in resistance against Phytophthora cinnamomiFunct Integr Genomics, 13
-
E Galiana, P Bonnet, S Conrod, H Keller, F Panabieres, M Ponchet, A Poupet, P Ricci (1997)
RNase activity prevents the growth of a fungal pathogen in tobacco leaves and increases induction of systemic acquired resistance with ElicitiPlant Physiol, 115
-
MA Heim, M Jakoby, M Werber, C Martine, B Weisshar, PC Bailey (2003)
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversityMol Biol and Evolution, 20
-
R Tsuwanto, H Fukuoka, Y Takahata (2008)
GASSHO1 and GASSHO2 encoding a putative leucine-rich repeat transmembrane-type receptor kinase are essential for normal development of the epidermal surface in Arabidopsis embryosPlant J, 54
-
M Christie, CA Brosnan, JA Rothnagel, BJ Carroll (2011)
RNA decay and RNA silencing in plants: competition or collaborationFrontiers in Plant Sci, 2
-
P Manosalva, M Manohar, KH Kogel, HG Kang, DF Klessig (2015)
The GHKL ATPase MORC1 modulates species-specific plant immunity in solanaceaeMol Plant-Microbe Interactions, 28
-
BJ Reeksting, N Coetzer, W Mahomed, J Engelbrecht, N Berg (2014)
De novo sequencing, assembly, and analysis of the root transcriptome of Persea americana (mill.) in response to Phytophthora cinnamomi and floodingPLOS ONE, 9
-
MS Hillwig, AL Contento, A Meyer, D Ebany, DC Bassham, GC MacIntosh (2011)
RNS2, a conserved member of the RNase T2 family is necessary for ribosomal RNA decay in plantsProc Natl Acad Sci U S A, 108
-
B Barna, J Fodor, BD Harrach, M Pogany, Z Király (2012)
The Janus face of reactive oxygen species in resistance and susceptibility of plants to necrotrophic and biotrophic pathogensPlant Physiol and Biochem, 59
-
VM Cruz, A Kilian, DA Dierig (2013)
Development of DArT marker platforms and genetic diversity assessment of the U.S. collection of the new oilseed crop lesquerella and related speciesPlos One, 8
-
M Mazarei, KA Lennon, DP Puthoff, SR Rodermel, TJ Baum (2003)
Expression of an Arabidopsis phosphoglycerate mutase homologue is localized to apical meristems, regulated by hormones, and induced by sedentary plant-parasitic nematodesPlant Mol Biol, 53
-
H Raman, R Raman, A Kilian, F Detering, J Carling, N Coombes, S Diffey, G Kadkol, D Edwards, M McCulley, P Ruperao, IAP Parkin, DJ Luckett, N Wratten (2014)
Genome-wide delineation of natural variation for pod shatter resistance in Brassica napusPLoS One, 9
-
S Serrazina, C Santos, H Machado, C Pesquita, R Vicentini, MS Pais, M Sebastiana, R Costa (2015)
Castanea root transcriptome in response to Phytophthora cinnamomi challengeTree Genet Genomes, 11
-
A Racolta, AC Bryan, FE Tax (2014)
The receptor-like kinases GSO1 and GSO2 together regulate root growth in Arabidopsis through control of cell division and cell fate specificationDev Dyn, 243
-
A Kilian, P Wenzl, E Huttner, J Carling, L Xia, H Blois, V Caig, K Heller-Uszynska, D Jaccoud, C Hopper, M Aschenbrenner-Kilian, M Evers, K Peng, C Cayla, P Hok, G Uszynski (2012)
Diversity arrays technology: a generic genome profiling technology on open platformsMeth Mol Biol, 888
-
J Engelbrecht, N Berg (2013)
Expression of defence-related genes against Phytophthora cinnamomi in five avocado rootstocksSouth African J of Sci, 109
-
KG Rohrbach, MW Johnson (2003)
The pineapple: botany, production and uses -
J Jupe, R Stam, AJM Howden, JA Morris, R Zhang, P Hedley, E Huitema (2013)
Phytophthora capsici-tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyleGenome Biol, 14
-
G Moissiard, S Bischof, D Husmann, WA Pastor, CJ Hale, L Yen, H Stroud, A Papikian, AA Vashisht, JA Wohlschlegel, SE Jacobsen (2014)
Transcriptional gene silencing by Arabidopsis microrchidia homologues involves the formation of heteromersProceedings of the Nat Acad of Sci of the United States of America, 111
-
RDD Silveira, FRM Abreu, S Mamidi, PR McClean, RP Vianello, AC Lanna, NP Carneiro, C Brondani (2015)
Expression of drought tolerance genes in tropical upland rice cultivars (Oryza sativa)Genet Mol Res, 14
-
C Zipfel, G Kunze, D Chinchilla, A Caniard, J Jones, T Boller, G Felix (2006)
Perception of the bacterial PAMP EF-Tu by the receptor EFR restricts agrobacterium-mediated transformationCell, 125
-
RJ Elshire, JC Glaubitz, Q Sun, JA Poland, K Kawamoto, ES Buckler, SE Mitchel (2011)
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity speciesPLoS One, 6
-
L Crooks, O Carlborg, S Markland, AM Johansson (2013)
Identification of null alleles and deletions from SNP genotypes for an intercross between domestic and wild chickens. G3 genes genomesGenetics, 3
- Publisher
- Springer Journals
- Copyright
- Copyright © 2017 by Australasian Plant Pathology Society Inc.
- Subject
- Life Sciences; Plant Pathology; Plant Sciences; Agriculture; Entomology; Ecology
- ISSN
- 0815-3191
- eISSN
- 1448-6032
- DOI
- 10.1007/s13313-017-0512-1
- Publisher site
- See Article on Publisher Site
Abstract
Root rot caused by Phytophthora cinnamomi is a major disease of pineapple worldwide, and while genetic resistance is known to exist within the genus, there have been few efforts to incorporate resistance into commercial varieties. The development of molecular markers and a better understanding of the physiology contributing to resistance would be a major advantage for breeding efforts. DArTseq was used in this study to investigate resistance to P. cinnamomi in pineapple. Resistance appears closely associated with a single broad loci on chromosome five covering the positions 4.6–5.5 Mb and two separate scaffolds. Thirteen putative resistance/susceptibility proteins were identified including six leucine-rich repeat receptor kinases, a chitin elicitor receptor kinase, a 2, 3-bisphosphoglycerate-dependent phosphoglycerate mutase, a microrchidia 4-like protein, a hypothetical protein, an uncharacterised protein family 0664 stress-induced protein, a transcription factor bHLH and a ribonuclease 2. The DArTseq bulk segregate approach successfully identified molecular markers associated with resistance to P. cinnamomi in pineapple.
Journal
Australasian Plant Pathology – Springer Journals
Published: Aug 22, 2017