Access the full text.
Sign up today, get DeepDyve free for 14 days.
NV Bassil (2015)
Development and preliminary evaluation of a 90 K axiom® SNP array for the Allo-octoploid cultivated strawberry Fragaria × ananassaBMC Genomics, 16
R Rugienius, JB Šikšnianienė, B Frercks, G Stanienė, I Stepulaitienė, P Haimi, V Stanys (2015)
Characterization of strawberry (Fragaria × ananassa Duch.) cultivars and hybrid clones using SSR and AFLP markersZemdirbyste, 102
I Biton, A Doron-Faigenboim, M Jamwal, Y Mani, R Eshed, A Rosen, A Sherman, R Ophir, S Lavee, B Avidan, G Ben-Ari (2015)
Development of a large set of SNP markers for assessing phylogenetic relationships between the olive cultivars composing the Israeli olive germplasm collectionMol Breed, 35
H Hirakawa (2014)
Dissection of the octoploid strawberry genome by deep sequencing of the genomes of Fragaria speciesDNA Res, 21
JN Lee, HJ Kim, KD Kim, DL Yoo, JT Sun (2012)
Characteristics of new ever-bearing strawberry 'Gwanha' cultivar for ornamental horticultureKorean J Hortic Sci, 30
G Arnau, J Lallemand, M Bourgoin (2003)
Fast and reliable strawberry cultivar identification using inter simple sequence repeat (ISSR) amplificationEuphytica, 129
RE Voorrips (2002)
MapChart: software for the graphical presentation of linkage maps and QTLsJ Hered, 93
C Degani, LJ Rowland, A Levi, JA Hortynski, GJ Galletta (1998)
DNA fingerprinting of strawberry (Fragaria × ananassa) cultivars using randomly amplified polymorphic DNA (RAPD) markersEuphytica, 102
JA Bell, DW Simpson (1994)
The use of isoenzyme polymorphisms as an aid for cultivar identification in strawberryProgress in Temperate Fruit Breeding, Springer Netherlands, 1
AM Hadonou, DJ Sargent, F Wilson, CM James, DW Simpson (2004)
Development of microsatellite markers in Fragaria, their use in genetic diversity analysis, and their potential for genetic linkage mappingGenome, 47
M Honjo, T Nunome, S Kataoka, T Yano, H Yamazaki, M Hamano, S Yui, M Morishita (2011)
Strawberry cultivar identification based on hypervariable SSR markersBreed Sci, 61
DJ Gil-Ariza, I Amaya, MA Botella, JM Blanco, JL Caballero, JM López-Aranda, V Valpuesta, JF Sánchez-Sevilla (2006)
EST-derived polymorphic microsatellites from cultivated strawberry (Fragaria × ananassa) are useful for diversity studies and varietal identification among Fragaria speciesMol Ecol Notes, 6
I Ganopoulos, A Tsaballa, A Xanthopoulou, P Madesis, A Tsaftaris (2013)
Sweet cherry cultivar identification by high-resolution-melting (HRM) analysis using gene-based SNP markersPlant Mol Biol Report, 31
L Milella, D Saluzzi, M Lapelosa, G Bertino, P Spada, I Greco, G Martelli (2006)
Relationships between an Italian strawberry ecotype and its ancestor using RAPD markersGenet Resour Crop Ev, 53
A Chambers, S Carle, W Njuguna, S Chamala, N Bassil, VM Whitaker, WB Barbazuk, KM Folta (2013)
A genome-enabled, high-throughput, and multiplexed fingerprinting platform for strawberry (Fragaria L.)Mol Breed, 31
A Keniry, CJ Hopkins, E Jewell, B Morrison, GC Spangenberg, D Edwards, J Batley (2006)
Identification and characterization of simple sequence repeat (SSR) markers from Fragaria × ananassa expressed sequencesMol Ecol Notes, 6
V Shulaev (2011)
The genome of woodland strawberry (Fragaria vesca)Nat Genet, 43
WP Fang, LW Meinhardt, HW Tan, L Zhou, S Mischke, D Zhang (2014)
Varietal identification of tea (Camellia sinensis) using nanofluidic array of single nucleotide polymorphism (SNP) markersHorm Res, 1
K Semagn, R Babu, S Hearne, M Olsen (2014)
Single nucleotide polymorphism genotyping using Kompetitive allele specific PCR (KASP): overview of the technology and its application in crop improvementMol Breed, 33
VM Whitaker (2011)
Applications of molecular markers in strawberryJ Berry Res, 1
DJ Gil-Ariza, I Amaya, JM López-Aranda, JF Sánchez-Sevilla, MÁ Botella, V Valpuesta (2009)
Impact of plant breeding on the genetic diversity of cultivated strawberry as revealed by expressed sequence tag-derived simple sequence repeat markersJ Am Soc Hortic Sci, 134
C Govan, DW Simpson, AW Johnson, KR Tobutt, DJ Sargent (2008)
A reliable multiplexed microsatellite set for genotyping Fragaria and its use in a survey of 60 F.× ananassa cultivarsMol Breed, 22
W Liu, Z Xiao, X Bao, X Yang, J Fang, X Xiang (2015)
Identifying litchi (Litchi chinensis Sonn.) cultivars and their genetic relationships using single nucleotide polymorphism (SNP) markersPLoS One, 10
DJ Sargent, Y Yang, N Šurbanovski, L Bianco, M Buti, R Velasco, L Giongo, TM Davis (2016)
HaploSNP affinities and linkage map positions illuminate subgenome composition in the octoploid, cultivated strawberry (Fragaria × ananassa)Plant Sci, 242
DJ Sargent, G Cipriani, S Vilanova, D Gil-Ariza, P Arús, DW Simpson, KR Tobutt, A Monfort (2008)
The development of a bin mapping population and the selective mapping of 103 markers in the diploid Fragaria reference mapGenome, 51
K Tamura, G Stecher, D Peterson, A Filipski, S Kumar (2013)
MEGA6: molecular evolutionary genetics analysis version 6.0Mol Biol Evol, 30
JA Cabezas, J Ibáñez, D Lijavetzky, D Vélez, G Bravo, V Rodríguez, I Carreño, AM Jermakow, J Carreño, L Ruiz-García, MR Thomas, JM Martinez-Zapater (2011)
A 48 SNP set for grapevine cultivar identificationBMC Plant Biol, 11
RGF Morales, JTV Resende, MV Faria, MC Andrade, LV Resende, CA Delatorre, PR Silva (2011)
Genetic similarity among strawberry cultivars assessed by RAPD and ISSR markersSci Agric, 68
JA Tennessen, R Govindarajulu, TL Ashman, A Liston (2014)
Evolutionary origins and dynamics of octoploid strawberry subgenomes revealed by dense targeted capture linkage mapsGenome Biol Evol, 6
L Zhou, T Matsumoto, HW Tan, LW Meinhardt, S Mischke, B Wang, D Zhang (2015)
Developing single nucleotide polymorphism markers for the identification of pineapple (Ananas comosus) germplasmHorm Res, 2
HG Choi, BY Moon, NJ Kang, JK Kwon, K Bekhzod, KS Park, SY Lee (2014)
Yield loss and quality degradation of strawberry fruits cultivated under the deficient insolation conditions by shadingHortic Environ Biotechnol, 55
AJ Ge, J Han, XD Li, MZ Zhao, H Liu, QH Dong, JG Fang (2013)
Characterization of SNPs in strawberry cultivars in ChinaGenet Mol Res, 12
M Kunihisa, N Fukino, S Matsumoto (2005)
CAPS markers improved by cluster-specific amplification for identification of octoploid strawberry (Fragaria × ananassa Duch.) cultivars, and their disomic inheritanceTheor Appl Genet, 110
W Deleu, C Esteras, C Roig, M González-To, I Fernández-Silva, D Gonzalez-Ibeas, J Blanca, MA Aranda, P Arús, F Nuez, AJ Monforte, MB Picó, J Garcia-Mas (2009)
A set of EST-SNPs for map saturation and cultivar identification in melonBMC Plant Biol, 9
Cultivated strawberry (Fragaria × ananassa) is an important commercial berry crop grown throughout the world. Improved strawberry cultivars are developed to meet the needs of consumers and breeders. Strawberries are usually propagated through runners, which sometimes lead to mislabeling or misinterpretation of cultivars. However, perfect identification of strawberry cultivars is essential for germplasm maintenance and for breeding programs. Molecular marker technology has been widely used to distinguish cultivars of other crops, but marker development in octoploid strawberries is complicated. Therefore, SNP marker with high-density and even distribution in the genome has been used currently as efficient DNA markers. In this report, previously published high-quality poly high resolution (PHR) SNPs from the 90 K Axiom® SNP array were utilized to develop a Fluidigm 24 SNPs genotyping system. Hundred nine (109) octoploid strawberry cultivars were screened using this 24 SNPs chip set. In addition, 24 SNPs were mapped to six chromosomes of diploid strawberry (Fragaria vesca). Our developed SNPs fluidigm genotyping is automatable, easy and reliable for processing and interpretation of data. Thus, this high-throughput SNP genotyping system will be a useful tool for distinguishing strawberry cultivars and find out parent-offspring relationship.
Tropical Plant Biology – Springer Journals
Published: Mar 24, 2017
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.