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Shake-and-Bake applications using simulated reference-beam data for crambin

Shake-and-Bake applications using simulated reference-beam data for crambin The Shake-and-Bake method, as implemented in the computer program SnB, has been applied to simulated reference-beam data for the small protein crambin at several resolutions in the range 1.5-3.0 A. Sets of triplet invariants were generated having simulated mean triplet-phase errors from 0 to 60Degrees. Provided that these errors were no larger than 40Degrees, it was possible (at all resolutions tested) to find trial sets of individual Bragg phases with mean errors of 40-45Degrees. At 1.5 A, this could be achieved using only a single reference-beam data set. Peak picking provided useful phase constraints even at the lowest resolution tested. These results suggest that direct methods may be useful in conjunction with reference-beam data at resolutions lower than . http://www.deepdyve.com/assets/images/DeepDyve-Logo-lg.png Acta Crystallographica Section A: Foundations of Crystallography International Union of Crystallography

Shake-and-Bake applications using simulated reference-beam data for crambin

Shake-and-Bake applications using simulated reference-beam data for crambin


Abstract

The Shake-and-Bake method, as implemented in the computer program SnB, has been applied to simulated reference-beam data for the small protein crambin at several resolutions in the range 1.5-3.0 A. Sets of triplet invariants were generated having simulated mean triplet-phase errors from 0 to 60Degrees. Provided that these errors were no larger than 40Degrees, it was possible (at all resolutions tested) to find trial sets of individual Bragg phases with mean errors of 40-45Degrees. At 1.5 A, this could be achieved using only a single reference-beam data set. Peak picking provided useful phase constraints even at the lowest resolution tested. These results suggest that direct methods may be useful in conjunction with reference-beam data at resolutions lower than .

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References (15)

Publisher
International Union of Crystallography
Copyright
Copyright (c) 2000 International Union of Crystallography
Subject
Shake-and-Bake, crambin, reference-beam diffraction
ISSN
0108-7673
eISSN
1600-5724
DOI
10.1107/S0108767300000829
Publisher site
See Article on Publisher Site

Abstract

The Shake-and-Bake method, as implemented in the computer program SnB, has been applied to simulated reference-beam data for the small protein crambin at several resolutions in the range 1.5-3.0 A. Sets of triplet invariants were generated having simulated mean triplet-phase errors from 0 to 60Degrees. Provided that these errors were no larger than 40Degrees, it was possible (at all resolutions tested) to find trial sets of individual Bragg phases with mean errors of 40-45Degrees. At 1.5 A, this could be achieved using only a single reference-beam data set. Peak picking provided useful phase constraints even at the lowest resolution tested. These results suggest that direct methods may be useful in conjunction with reference-beam data at resolutions lower than .

Journal

Acta Crystallographica Section A: Foundations of CrystallographyInternational Union of Crystallography

Published: May 1, 2000

Keywords: Shake-and-Bake; crambin; reference-beam diffraction.

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