Access the full text.
Sign up today, get DeepDyve free for 14 days.
D. Kizirian, M. Donnelly (2004)
The criterion of reciprocal monophyly and classification of nested diversity at the species level.Molecular phylogenetics and evolution, 32 3
F. Zachos, M. Apollonio, E. Bärmann, M. Festa‐Bianchet, U. Göhlich, J. Habel, E. Haring, L. Kruckenhauser, S. Lovari, Allan Mcdevitt, C. Pertoldi, Gertrud Rössner, M. Sánchez-Villagra, M. Scandura, F. Suchentrunk (2013)
Species inflation and taxonomic artefacts—A critical comment on recent trends in mammalian classificationMammalian Biology, 78
M. Stephens, P. Scheet
Accounting for Decay of Linkage Disequilibrium in Haplotype Inference and Missing-data Imputation
N. Robinson, C. MacGregor, B. Hradsky, N. Dexter, D. Lindenmayer (2018)
Bandicoots return to Booderee: initial survival, dispersal, home range and habitat preferences of reintroduced southern brown bandicoots (eastern sub species; Isoodon obesulus obesulus)Wildlife Research, 45
H. Amrine-Madsen, M. Scally, M. Westerman, M. Stanhope, C. Krajewski, M. Springer (2003)
Nuclear gene sequences provide evidence for the monophyly of australidelphian marsupials.Molecular phylogenetics and evolution, 28 2
Connor Burgin, J. Colella, Philip Kahn, N. Upham (2018)
How many species of mammals are there?Journal of Mammalogy, 99
R. Frankham, J. Ballou, M. Eldridge, R. Lacy, K. Ralls, Michele Dudash, C. Fenster (2011)
Predicting the Probability of Outbreeding DepressionConservation Biology, 25
You Li, Melanie Lancaster, S. Cooper, A. Taylor, S. Carthew (2015)
Population structure and gene flow in the endangered southern brown bandicoot (Isoodon obesulus obesulus) across a fragmented landscapeConservation Genetics, 16
K. Moseby, BRYDIE Hill, JOHN Read (2009)
Arid Recovery - A comparison of reptile and small mammal populations inside and outside a large rabbit, cat and fox-proof exclosure in arid South AustraliaAustral Ecology, 34
(2019)
The Oz MammalsGenomics ( OMG ) initiative : developing genomic resources for mammalconservationatacontinental scale
(2020)
Downloaded From: https://bioone.org/journals/Australian-Journal-of-Zoology on 26 Feb 2020 Terms of Use: https://bioone.org/terms-of-use Access
(2015)
Forty years of fauna translocations in Western Australia: lessons learned
M. Adams, T. Page, D. Hurwood, J. Hughes (2013)
A molecular assessment of species boundaries and phylogenetic affinities in Mogurnda (Eleotridae): A case study of cryptic biodiversity in the Australian freshwater fishesScience & Engineering Faculty
K. Tamura, G. Stecher, D. Peterson, A. Filipski, Sudhir Kumar (2013)
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.Molecular biology and evolution, 30 12
Fu (1997)
10.1093/genetics/147.2.915Genetics, 147
Kym Ottewell, J. Dunlop, N. Thomas, K. Morris, D. Coates, M. Byrne (2014)
Evaluating success of translocations in maintaining genetic diversity in a threatened mammalBiological Conservation, 171
J. Laerm, J. Avise, J. Patton, R. Lansman (1982)
Genetic Determination of the Status of an Endangered Species of Pocket Gopher in GeorgiaJournal of Wildlife Management, 46
Stephens (2005)
10.1086/428594American Journal of Human Genetics, 76
M. Stephens, N. Smith, P. Donnelly (2001)
A new statistical method for haplotype reconstruction from population data.American journal of human genetics, 68 4
M. Hasegawa, H. Kishino, T. Yano (2005)
Dating of the human-ape splitting by a molecular clock of mitochondrial DNAJournal of Molecular Evolution, 22
Catriona Campbell, S. Sarre, D. Stojanović, B. Gruber, K. Medlock, S. Harris, Anna Macdonald, C. Holleley (2018)
When is a native species invasive? Incursion of a novel predatory marsupial detected using molecular and historical dataDiversity and Distributions, 24
F. Rodríguez, F. Rodriguez, J. Oliver, J. Oliver, A. Marín, A. Marín, J. Medina, J. Medina (1990)
The general stochastic model of nucleotide substitution.Journal of theoretical biology, 142 4
K. Zenger, M. Eldridge, P. Johnston (2005)
Phylogenetics, population structure and genetic diversity of the endangered southern brown bandicoot (Isoodon obesulus) in south-eastern AustraliaConservation Genetics, 6
P. Menkhorst, Frank Knight (2001)
A field guide to the mammals of Australia
A. Burbidge, N. McKenzie (1989)
Patterns in the modern decline of western Australia's vertebrate fauna: Causes and conservation implicationsBiological Conservation, 50
F. Tajima (1989)
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.Genetics, 123 3
Gutiérrez (2013)
10.1038/495314eNature, 495
Cleusa Ely, S. Bordignon, R. Trevisan, I. Boldrini (2017)
Implications of poor taxonomy in conservationJournal for Nature Conservation, 36
(1990)
Electrophoretic and chromosome surveys of the taxa of short-nosed bandicoots within the genus Isoodon
N. McKenzie, A. Burbidge, A. Baynes, R. Brereton, Chris Dickman, G. Gordon, Lesley Gibson, Peter Menkhorst, A. Robinson, Matthew Williams, J. Woinarski (2007)
Analysis of factors implicated in the recent decline of Australia's mammal faunaJournal of Biogeography, 34
A. Weeks, C. Sgrò, A. Young, R. Frankham, N. Mitchell, Kim Miller, M. Byrne, D. Coates, M. Eldridge, P. Sunnucks, M. Breed, E. James, A. Hoffmann (2011)
Assessing the benefits and risks of translocations in changing environments: a genetic perspectiveEvolutionary Applications, 4
S. Jackson, C. Groves (2015)
Taxonomy of Australian Mammals
You Li, Melanie Lancaster, S. Carthew, J. Packer, S. Cooper (2014)
Delineation of conservation units in an endangered marsupial, the southern brown bandicoot (Isoodon obesulus obesulus), in South Australia/western Victoria, AustraliaAustralian Journal of Zoology, 62
S. Potter, C. Moritz, M. Eldridge (2015)
Gene flow despite complex Robertsonian fusions among rock-wallaby (Petrogale) speciesBiology Letters, 11
D. Paull, D. Mills, A. Claridge (2013)
Fragmentation of the Southern Brown Bandicoot Isoodon obesulus: Unraveling Past Climate Change from Vegetation ClearingInternational Journal of Ecology, 2013
L. Fumagalli, L. Pope, P. Taberlet, C. Moritz (1997)
Versatile primers for the amplification of the mitochondrial DNA control region in marsupialsMolecular Ecology, 6
Tajima (1989)
10.1093/genetics/123.3.585Genetics, 123
Michael Driessen, Robert Rose (2015)
Isoodon obesulus (Peramelemorphia: Peramelidae), 47
J. Woinarski, A. Burbidge, P. Harrison (2014)
The Action Plan for Australian Mammals 2012
L. Excoffier, H. Lischer (2010)
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and WindowsMolecular Ecology Resources, 10
G. Frankham, K. Handasyde, M. Eldridge (2016)
Evolutionary and contemporary responses to habitat fragmentation detected in a mesic zone marsupial, the long‐nosed potoroo (Potorous tridactylus) in south‐eastern AustraliaJournal of Biogeography, 43
J. Woinarski, A. Burbidge, P. Harrison (2015)
Ongoing unraveling of a continental fauna: Decline and extinction of Australian mammals since European settlementProceedings of the National Academy of Sciences, 112
B. Richardson, P. Baverstock, M. Adams, M. King (1988)
Allozyme Electrophoresis: A Handbook for Animal Systematics and Population Studies
J. Alroy, Jr Ball (1990)
Principles of genealogical concordance in species concepts and biological taxonomy, 7
A. Weeks, D. Heinze, Louise Perrin, J. Stoklosa, A. Hoffmann, A. Rooyen, Tom Kelly, I. Mansergh (2017)
Genetic rescue increases fitness and aids rapid recovery of an endangered marsupial populationNature Communications, 8
(2018)
Back from the brink: crowdfunding for the genetic rescue of eastern barred bandicoots
T. Coates, D. Nicholls, R. Willig (2008)
The Distribution of the Southern Brown Bandicoot 'Isoodon Obesulus' in South Central VictoriaVictorian naturalist, 125
Jeff Short, Andrew Smith (1994)
MAMMAL DECLINE AND RECOVERY IN AUSTRALIAJournal of Mammalogy, 75
Jason Bragg, S. Potter, K. Bi, Renee Catullo, S. Donnellan, M. Eldridge, L. Joseph, J. Keogh, P. Oliver, K. Rowe, C. Moritz (2017)
Resources for phylogenomic analyses of Australian terrestrial vertebratesMolecular Ecology Resources, 17
J. Kingman (2000)
Origins of the coalescent. 1974-1982.Genetics, 156 4
A. Stamatakis, Paul Hoover, J. Rougemont (2008)
A rapid bootstrap algorithm for the RAxML Web servers.Systematic biology, 57 5
Reece Pedler, R. West, J. Read, K. Moseby, Mike Letnic, D. Keith, K. Leggett, Sharon Ryall, R. Kingsford (2018)
Conservation challenges and benefits of multispecies reintroductions to a national park – a case study from New South Wales, AustraliaPacific Conservation Biology, 24
S. Legge, J. Woinarski, A. Burbidge, R. Palmer, Jeremy Ringma, James Radford, N. Mitchell, M. Bode, B. Wintle, M. Baseler, J. Bentley, P. Copley, N. Dexter, C. Dickman, G. Gillespie, B. Hill, Christopher Johnson, P. Latch, Mike Letnic, A. Manning, Erin McCreless, P. Menkhorst, K. Morris, K. Moseby, M. Page, D. Pannell, K. Tuft (2018)
Havens for threatened Australian mammals: the contributions of fenced areas and offshore islands to the protection of mammal species susceptible to introduced predatorsWildlife Research, 45
J. Avise (1993)
Molecular Markers, Natural History and Evolution
Anna Macdonald, S. Sarre (2017)
A framework for developing and validating taxon‐specific primers for specimen identification from environmental DNAMolecular Ecology Resources, 17
M. Westerman, C. Krajewski (2000)
Molecular relationships of the Australian bandicoot genera Isoodon and Perameles (Marsupialia: Peramelina).Australian Mammalogy, 22
M. Osborne, L. Christidis (2001)
Molecular phylogenetics of Australo-Papuan possums and gliders (family Petauridae).Molecular phylogenetics and evolution, 20 2
G. Mace (2004)
The role of taxonomy in species conservation.Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 359 1444
A. Lyne, P. Mort (1981)
A comparison of skull morphology in the marsupial bandicoot genus lsoodon: its taxonomic implications and notes on a new species, lsoodon arnhemensis.Australian Mammalogy
N. Warburton, K. Travouillon (2016)
The biology and palaeontology of the Peramelemorphia: a review of current knowledge and future research directionsAustralian Journal of Zoology, 64
C. Moritz (1994)
Defining 'Evolutionarily Significant Units' for conservation.Trends in ecology & evolution, 9 10
S. Potter, Jason Bragg, Mozes Blom, J. Deakin, M. Kirkpatrick, M. Eldridge, C. Moritz (2017)
Chromosomal Speciation in the Genomics Era: Disentangling Phylogenetic Evolution of Rock-wallabiesFrontiers in Genetics, 8
J. Hey (2010)
Isolation with migration models for more than two populations.Molecular biology and evolution, 27 4
You Li, S. Cooper, Melanie Lancaster, J. Packer, S. Carthew (2016)
Comparative Population Genetic Structure of the Endangered Southern Brown Bandicoot, Isoodon obesulus, in Fragmented Landscapes of Southern AustraliaPLoS ONE, 11
M. Adams, T. Raadik, C. Burridge, A. Georges (2014)
Global biodiversity assessment and hyper-cryptic species complexes: more than one species of elephant in the room?Systematic biology, 63 4
Anna Macdonald, S. Sarre, N. FitzSimmons, N. Aitken (2010)
Determining microsatellite genotyping reliability and mutation detection ability: an approach using small-pool PCR from sperm DNAMolecular Genetics and Genomics, 285
Kingman (2000)
10.1093/genetics/156.4.1461Genetics, 156
James Radford, J. Woinarski, S. Legge, M. Baseler, J. Bentley, A. Burbidge, M. Bode, P. Copley, N. Dexter, C. Dickman, G. Gillespie, B. Hill, Christopher Johnson, J. Kanowski, P. Latch, Mike Letnic, A. Manning, P. Menkhorst, N. Mitchell, K. Morris, K. Moseby, M. Page, Jeremy Ringma (2018)
Degrees of population-level susceptibility of Australian terrestrial non-volant mammal species to predation by the introduced red fox (Vulpes vulpes) and feral cat (Felis catus)Wildlife Research, 45
M. Westerman, B. Kear, K. Aplin, R. Meredith, C. Emerling, M. Springer (2012)
Phylogenetic relationships of living and recently extinct bandicoots based on nuclear and mitochondrial DNA sequences.Molecular phylogenetics and evolution, 62 1
Driessen (2015)
10.1093/mspecies/sev012Mammalian Species, 47
S. Ho, R. Lanfear, L. Bromham, M. Phillips, Julien Soubrier, A. Rodrigo, A. Cooper (2011)
Time‐dependent rates of molecular evolutionMolecular Ecology, 20
J. Honacki, K. Kinman, J. Koeppl (1982)
Mammal species of the world : a taxonomic and geographic reference
K. Travouillon, M. Phillips (2018)
Total evidence analysis of the phylogenetic relationships of bandicoots and bilbies (Marsupialia: Peramelemorphia): reassessment of two species and description of a new species.Zootaxa, 4378 2
R. Meredith, M. Westerman, M. Springer (2008)
A timescale and phylogeny for "bandicoots" (Peramelemorphia: Marsupialia) based on sequences for five nuclear genes.Molecular phylogenetics and evolution, 47 1
Yunxin Fu (1997)
Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection.Genetics, 147 2
Ziheng Yang (1996)
Among-site rate variation and its impact on phylogenetic analyses.Trends in ecology & evolution, 11 9
L. Pope, D. Storch, M. Adams, C. Moritz, G. Gordon (2001)
A phylogeny for the genus Isoodon and a range extension for I. obesulus peninsulae based on mtDNA control region and morphologyAustralian Journal of Zoology, 49
D. Paull (1995)
The distribution of the southern brown bandicoot (Isoodon obesulus obesulus) in South AustraliaWildlife Research, 22
R. Southgate, C. Palmer, M. Adams, P. Masters, B. Triggs, J. Woinarski (1996)
Population and habitat characteristics of the golden bandicoot (Isoodon auratus) on Marchinbar Island, Northern Territory.Wildlife Research, 23
Southern brown (Isoodon obesulus) and golden (Isoodon auratus) bandicoots are iconic Australian marsupials that have experienced dramatic declines since European settlement. Conservation management programs seek to protect the remaining populations however, these programs are impeded by major taxonomic uncertainties. We investigated the history of population connectivity to inform subspecies and species boundaries through a broad-scale phylogeographic and population genetic analysis of Isoodon taxa. Our analyses reveal a major eastwest phylogeographic split within I. obesulus/I. auratus, supported by both mtDNA and nuclear gene analyses, which is not coincident with the current species or subspecies taxonomy. In the eastern lineage, all Tasmanian samples formed a distinct monophyletic haplotype group to the exclusion of all mainland samples, indicative of long-term isolation of this population from mainland Australia and providing support for retention of the subspecific status of the Tasmanian population (I. o. affinis). Analyses further suggest that I. o. obesulus is limited to south-eastern mainland Australia, representing a significant reduction in known range. However, the analyses provide no clear consensus on the taxonomic status of bandicoot populations within the western lineage, with further analyses required, ideally incorporating data from historical museum specimens to fill distributional gaps.
Australian Journal of Zoology – CSIRO Publishing
Published: Jan 8, 2020
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.