Access the full text.
Sign up today, get DeepDyve free for 14 days.
R. Bouckaert, Joseph Heled, D. Kühnert, T. Vaughan, Chieh-Hsi Wu, Dong Xie, M. Suchard, A. Rambaut, A. Drummond (2014)
BEAST 2: A Software Platform for Bayesian Evolutionary AnalysisPLoS Computational Biology, 10
F. Ronquist, M. Teslenko, Paul Mark, Daniel Ayres, A. Darling, S. Höhna, B. Larget, Liang Liu, M. Suchard, J. Huelsenbeck (2012)
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model SpaceSystematic Biology, 61
S. Barrett (2010)
Understanding plant reproductive diversityPhilosophical Transactions of the Royal Society B: Biological Sciences, 365
C. Puente-Lelièvre, M. Harrington, E. Brown, Maria Kuzmina, D. Crayn (2013)
Cenozoic extinction and recolonization in the New Zealand flora: the case of the fleshy-fruited epacrids (Styphelieae, Styphelioideae, Ericaceae).Molecular phylogenetics and evolution, 66 1
D. Szlachetko (2001)
Genera et species Orchidalium. 1.Polish Botanical Journal, 46
S. Wright, S. Kalisz, T. Slotte (2013)
Evolutionary consequences of self-fertilization in plantsProceedings of the Royal Society B: Biological Sciences, 280
R. Ree, Stephen Smith (2008)
Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis.Systematic biology, 57 1
P. Cuénoud, V. Savolainen, L. Chatrou, M. Powell, R. Grayer, M. Chase (2002)
Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences.American journal of botany, 89 1
E. Goldberg, J. Kohn, R. Lande, K. Robertson, Stephen Smith, B. Igić (2010)
Species Selection Maintains Self-IncompatibilityScience, 330
B. Lamont, K. Downes (2011)
Fire-stimulated flowering among resprouters and geophytes in Australia and South AfricaPlant Ecology, 212
D. Darriba, G. Taboada, R. Doallo, D. Posada (2012)
CircadiOmics: integrating circadian genomics, transcriptomics, proteomics and metabolomicsNature Methods, 9
H. Voris (2000)
Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durationsJournal of Biogeography, 27
Kurt Neubig, W. Whitten, Barbara Carlsward, Mario Blanco, Mario Blanco, Lorena Endara, N. Williams, M. Moore (2009)
Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matKPlant Systematics and Evolution, 277
R. Tremblay, J. Ackerman, J. Zimmerman, R. Calvo (2004)
Variation in sexual reproduction in orchids and its evolutionary consequences: a spasmodic journey to diversificationBiological Journal of The Linnean Society, 84
Jeremiah Busch, L. Delph (2012)
The relative importance of reproductive assurance and automatic selection as hypotheses for the evolution of self-fertilization.Annals of botany, 109 3
M. Ebach, Carlos González‐Orozco, Joseph Miller, D. Murphy (2015)
A revised area taxonomy of phytogeographical regions within the Australian Bioregionalisation AtlasPhytotaxa, 208
Y. Sun, D. Skinner, George Liang, S. Hulbert (1994)
Phylogenetic analysis of Sorghum and related taxa using internal transcribed spacers of nuclear ribosomal DNATheoretical and Applied Genetics, 89
N. Matzke (2014)
Model selection in historical biogeography reveals that founder-event speciation is a crucial process in Island Clades.Systematic biology, 63 6
K. Katoh, D. Standley (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityMolecular Biology and Evolution, 30
K. Wilson, D. Morrison, M. Molvray, P. Kores, M. Chase (2000)
Polyphyly of mycoheterotrophic orchids and functional influences on floral and molecular characters
H. Baker (1955)
SELF‐COMPATIBILITY AND ESTABLISHMENT AFTER ‘“LONG‐DISTANCE” DISPERSALEvolution, 9
J. Escobar, A. Cenci, Jeremy Bolognini, Annabelle Haudry, S. Laurent, J. David, S. Glémin (2010)
AN INTEGRATIVE TEST OF THE DEAD‐END HYPOTHESIS OF SELFING EVOLUTION IN TRITICEAE (POACEAE)Evolution, 64
A. Drummond, A. Rambaut (2007)
BEAST: Bayesian evolutionary analysis by sampling treesBMC Evolutionary Biology, 7
L. Johnson, D. Soltis (1994)
MatK DNA Sequences and Phylogenetic Reconstruction in Saxifragaceae s. strSystematic Botany, 19
K. Cameron, M. Chase, W. Whitten, P. Kores, D. Jarrell, V. Albert, T. Yukawa, H. Hills, D. Goldman (1999)
A phylogenetic analysis of the Orchidaceae: evidence from rbcL nucleotide.American journal of botany, 86 2
P. Rudall, R. Bateman (2002)
Roles of synorganisation, zygomorphy and heterotopy in floral evolution: the gynostemium and labellum of orchids and other lilioid monocotsBiological Reviews, 77
B. Igić, Jeremiah Busch (2013)
Is self-fertilization an evolutionary dead end?The New phytologist, 198 2
D. Norton, P. Lange (2003)
Fire and Vegetation in a Temperate Peat Bog: Implications for the Management of Threatened SpeciesConservation Biology, 17
P. Kores, M. Molvray, P. Weston, S. Hopper, A. Brown, K. Cameron, M. Chase (2001)
A phylogenetic analysis of Diurideae (Orchidaceae) based on plastid DNA sequence data.American journal of botany, 88 10
H. Martin (2006)
Cenozoic climatic change and the development of the arid vegetation in AustraliaJournal of Arid Environments, 66
I. Sanmartín, L. Wanntorp, R. Winkworth (2007)
West Wind Drift revisited: testing for directional dispersal in the Southern Hemisphere using event‐based tree fittingJournal of Biogeography, 34
S. Barrett (2013)
The evolution of plant reproductive systems: how often are transitions irreversible?Proceedings of the Royal Society B: Biological Sciences, 280
G. Stebbins (1957)
Self Fertilization and Population Variability in the Higher PlantsThe American Naturalist, 91
Mark Chase, M. Chase, K. Cameron, J. Freudenstein, A. Pridgeon, G. Salazar, C. Berg, A. Schuiteman (2015)
An updated classification of OrchidaceaeBotanical Journal of the Linnean Society, 177
H. Linder, C. Hardy, Frank Rutschmann (2005)
Taxon sampling effects in molecular clock dating: an example from the African Restionaceae.Molecular phylogenetics and evolution, 35 3
Matthew Kearse, R. Moir, Amy Wilson, Steven Stones-Havas, M. Cheung, S. Sturrock, S. Buxton, A. Cooper, S. Markowitz, Chris Duran, T. Thierer, Bruce Ashton, Peter Meintjes, A. Drummond (2012)
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence dataBioinformatics, 28
H. Akaike (1978)
On the Likelihood of a Time Series ModelThe Statistician, 27
D. Calder, S. Cropper, D. Tonkinson (1989)
The Ecology of Thelymitra epipactoides F Muell (Orchidaceae) in Victoria, Australia, and the Implications for Management of the SpeciesAustralian Journal of Botany, 37
F. Coates, I. Lunt, R. Tremblay (2006)
Effects of disturbance on population dynamics of the threatened orchid Prasophyllum correctum D.L. Jones and implications for grassland management in south-eastern AustraliaBiological Conservation, 129
H. Akaike (1974)
A new look at the statistical model identificationIEEE Transactions on Automatic Control, 19
(2002)
Phylogenetics of Diurideae ( Orchidaceae ) based on the internal transcribed spacer ( ITS ) regions of nuclear ribosomal DNA
P. Lewis (2001)
A likelihood approach to estimating phylogeny from discrete morphological character data.Systematic biology, 50 6
H. Akaike (1973)
Information Theory and an Extension of the Maximum Likelihood Principle, 1
T. Givnish, Daniel Spalink, M. Ames, S. Lyon, Steven Hunter, A. Zuluaga, Alfonso Doucette, Giovanny Caro, James McDaniel, M. Clements, M. Arroyo, Lorena Endara, R. Kriebel, N. Williams, K. Cameron (2016)
Orchid historical biogeography, diversification, Antarctica and the paradox of orchid dispersalJournal of Biogeography, 43
P. Taberlet, L. Gielly, G. Pautou, J. Bouvet (1991)
Universal primers for amplification of three non-coding regions of chloroplast DNAPlant Molecular Biology, 17
Mariana Mondragón-Palomino, G. Theißen (2009)
Why are orchid flowers so diverse? Reduction of evolutionary constraints by paralogues of class B floral homeotic genes.Annals of botany, 104 3
Lars Nauheimer, Rowan Schley, M. Clements, C. Micheneau, Katharina Nargar (2018)
Australasian orchid biogeography at continental scale: Molecular phylogenetic insights from the Sun Orchids (Thelymitra, Orchidaceae).Molecular phylogenetics and evolution, 127
G. Chomicki, L. Bidel, F. Ming, Mario Coiro, Xuan Zhang, Yaofeng Wang, Y. Baissac, C. Jay-Allemand, S. Renner (2015)
The velamen protects photosynthetic orchid roots against UV-B damage, and a large dated phylogeny implies multiple gains and losses of this function during the Cenozoic.The New phytologist, 205 3
J. Shaw, Edgar Lickey, E. Schilling, R. Small (2007)
Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III.American journal of botany, 94 3
F. Ronquist (1997)
Dispersal-Vicariance Analysis: A New Approach to the Quantification of Historical BiogeographySystematic Biology, 46
A. Kershaw (1994)
Pleistocene vegetation of the humid tropics of northeastern Queensland
M. Crisp, L. Cook (2007)
A congruent molecular signature of vicariance across multiple plant lineages.Molecular phylogenetics and evolution, 43 3
A. Stamatakis (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesBioinformatics, 30
S. Barrett (1996)
The Reproductive Biology and Genetics of Island PlantsPhilosophical transactions - Royal Society. Mathematical, physical and engineering sciences, 351
Stéphane Guindon, O. Gascuel (2003)
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.Systematic biology, 52 5
Phylogenetic relationships in Calochilus (~30 species) were inferred based on a supermatrix of 81 loci including 22 species. To examine the spatio-temporal evolution of Calochilus, divergence-time estimations were conducted within a Bayesian framework using an uncorrelated relaxed molecular-clock model, followed by maximum-likelihood ancestral-range reconstructions comparing four biogeographic models. To trace the evolution of key floral and vegetative characters, maximum-likelihood ancestral-character reconstructions were carried out. The stem age of Calochilus was dated to ~12.0 million years ago in the mid-Miocene. Divergence of Calochilus into a tropical and a temperate clade was inferred to have occurred ~7.6 million years ago in the late Miocene. Northern Australia was reconstructed as the ancestral area of the tropical clade and the Euronotian region for the temperate clade. Range expansions from Australia to other Australasian regions, such as New Zealand and New Guinea, were inferred to have occurred only in recent geological times, commencing in the Pleistocene. The infrageneric classification for Calochilus was revised, erecting two subgenera, subgenus Calochilus and subgenus Tropichilus subgen. nov. Section Calochilus Szlach. was recircumscribed, and sect. Abrochilus sect. nov., and section Placochilus sect. nov. were erected. Identification keys to subgenera and sections and a taxonomic synopsis of the genus are provided.
Australian Systematic Botany – CSIRO Publishing
Published: Jan 1, 2018
Read and print from thousands of top scholarly journals.
Already have an account? Log in
Bookmark this article. You can see your Bookmarks on your DeepDyve Library.
To save an article, log in first, or sign up for a DeepDyve account if you don’t already have one.
Copy and paste the desired citation format or use the link below to download a file formatted for EndNote
Access the full text.
Sign up today, get DeepDyve free for 14 days.
All DeepDyve websites use cookies to improve your online experience. They were placed on your computer when you launched this website. You can change your cookie settings through your browser.