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Z. Gu, Satyanaryana Eleswarapu, Honglin Jiang (2007)
Identification and characterization of microRNAs from the bovine adipose tissue and mammary glandFEBS Letters, 581
Benoît Graulet, D. Gruffat, Denys Durand, D. Bauchart (1998)
Fatty acid metabolism and very low density lipoprotein secretion in liver slices from rats and preruminant calves.Journal of biochemistry, 124 6
C. Walker, S. Meier, M. Littlejohn, K. Lehnert, J. Roche, M. Mitchell (2010)
Modulation of the maternal immune system by the pre-implantation embryoBMC Genomics, 11
N. Forde, M. Beltman, G. Duffy, P. Duffy, J. Mehta, P. O'Gaora, J. Roche, P. Lonergan, M. Crowe (2011)
Changes in the Endometrial Transcriptome During the Bovine Estrous Cycle: Effect of Low Circulating Progesterone and Consequences for Conceptus Elongation1, 84
N. Forde, F. Carter, T. Spencer, F. Bazer, O. Sandra, N. Mansouri-Attia, L. Okumu, P. McGettigan, J. Mehta, R. McBride, P. O'Gaora, J. Roche, P. Lonergan (2011)
Conceptus-Induced Changes in the Endometrial Transcriptome: How Soon Does the Cow Know She Is Pregnant?1, 85
D. Grum, J. Drackley, R. Younker, D. LaCount, J. Veenhuizen (1996)
Nutrition during the dry period and hepatic lipid metabolism of periparturient dairy cows.Journal of dairy science, 79 10
S. McCarthy, S. McCarthy, S. Waters, David Kenny, M. Diskin, Richard Fitzpatrick, J. Patton, D. Wathes, D. Morris (2010)
Negative energy balance and hepatic gene expression patterns in high-yielding dairy cows during the early postpartum period: a global approachPhysiological Genomics, 42A
Leming Shi, W. Jones, R. Jensen, Stephen Harris, R. Perkins, F. Goodsaid, Lei Guo, L. Croner, C. Boysen, H. Fang, F. Qian, S. Amur, W. Bao, Catalin Barbacioru, V. Bertholet, X. Cao, T. Chu, P. Collins, Xiao-hui Fan, F. Frueh (2008)
The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studiesBMC Bioinformatics, 9
J. Underwood (2003)
Protein Nutrition of Dairy Cows During the Transition Period
M. Clemente, I. López-Vidriero, Peadar O'Gaora, J. Mehta, N. Forde, Alfonso Gutiérrez-Adán, Patrick Lonergan, D. Rizos (2011)
Transcriptome Changes at the Initiation of Elongation in the Bovine Conceptus1, 85
D. Morris, S. Waters, S. McCarthy, S. McCarthy, J. Patton, B. Earley, R. Fitzpatrick, J. Murphy, M. Diskin, D. Kenny, A. Brass, D. Wathes (2009)
Pleiotropic effects of negative energy balance in the postpartum dairy cow on splenic gene expression: repercussions for innate and adaptive immunityPhysiological Genomics, 39
R. Baldwin, J. Thornley, D. Beever (1987)
Metabolism of the lactating cow: II. Digestive elements of a mechanistic modelJournal of Dairy Research, 54
C. Elsik, R. Tellam, K. Worley (2009)
The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and EvolutionScience, 324
J. Sumner-Thomson, J. Vierck, J. Mcnamara (2011)
Differential expression of genes in adipose tissue of first-lactation dairy cattle.Journal of dairy science, 94 1
J. Loor, K. Moyes, M. Bionaz (2011)
Functional Adaptations of the Transcriptome to Mastitis-Causing Pathogens: The Mammary Gland and BeyondJournal of Mammary Gland Biology and Neoplasia, 16
M. Band, C. Olmstead, R. Everts, Zongling Liu, H. Lewin (2002)
A 3800 GENE MICROARRAY FOR CATTLE FUNCTIONAL GENOMICS: COMPARISON OF GENE EXPRESSION IN SPLEEN, PLACENTA, AND BRAINAnimal Biotechnology, 13
L. Zhu, L. Armentano, D. Bremmer, R. Grummer, S. Bertics (2000)
Plasma concentration of urea, ammonia, glutamine around calving, and the relation of hepatic triglyceride, to plasma ammonia removal and blood acid-base balance.Journal of dairy science, 83 4
H. Sejersen, M. Sørensen, T. Larsen, E. Bendixen, K. Ingvartsen (2012)
Liver protein expression in dairy cows with high liver triglycerides in early lactation.Journal of dairy science, 95 5
R. Baldwin, K. Donovan (1999)
Modeling ruminant digestion and metabolism.Advances in experimental medicine and biology, 445
T. Casey, Heather Dover, J. Liesman, Lindsey DeVries, M. Kiupel, M. VandeHaar, K. Plaut (2011)
Transcriptome Analysis of Epithelial and Stromal Contributions to Mammogenesis in Three Week Prepartum CowsPLoS ONE, 6
Da Huang, Brad Sherman, R. Lempicki (2008)
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene listsNucleic Acids Research, 37
Jan Schellenberger, Junyoung Park, Tom Conrad, B. Palsson (2010)
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructionsBMC Bioinformatics, 11
N. Forde, F. Carter, T. Fair, M. Crowe, A. Evans, T. Spencer, F. Bazer, R. McBride, M. Boland, P. O'Gaora, P. Lonergan, J. Roche (2009)
Progesterone-Regulated Changes in Endometrial Gene Expression Contribute to Advanced Conceptus Development in Cattle1, 81
J. Yao, J. Burton, P. Saama, S. Sipkovsky, P. Coussens (2003)
Generation of EST and cDNA Microarray Resources for the Study of Bovine Immunobiology*Acta Veterinaria Scandinavica, 44
Robert Li, M. Meyer, C. Tassell, T. Sonstegard, E. Connor, M. Amburgh, Y. Boisclair, A. Capuco (2006)
Identification of estrogen-responsive genes in the parenchyma and fat pad of the bovine mammary gland by microarray analysis.Physiological genomics, 27 1
M. Niño-Soto, A. Heriazon, Margaret Quinton, Filippo Miglior, K. Thompson, Bonnie Mallard (2008)
Differential gene expression of high and low immune responder Canadian Holstein dairy cows.Developments in biologicals, 132
L. Coutinho, L. Matukumalli, T. Sonstegard, C. Tassell, L. Gasbarre, A. Capuco, T. Smith (2007)
Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues.Physiological genomics, 29 1
N. Friggens (2003)
Body lipid reserves and the reproductive cycle: towards a better understandingLivestock Production Science, 83
J. Drackley, T. Overton, G. Douglas (2001)
Adaptations of Glucose and Long-Chain Fatty Acid Metabolism in Liver of Dairy Cows during the Periparturient PeriodJournal of Dairy Science, 84
C. Walker, M. Littlejohn, M. Mitchell, J. Roche, S. Meier (2012)
Endometrial gene expression during early pregnancy differs between fertile and subfertile dairy cow strains.Physiological genomics, 44 1
R. Grummer (1995)
Impact of changes in organic nutrient metabolism on feeding the transition dairy cow.Journal of animal science, 73 9
Martin Sigurdsson, N. Jamshidi, E. Steingrímsson, I. Thiele, B. Palsson (2010)
A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1BMC Systems Biology, 4
R. Caspi, Tomer Altman, K. Dreher, C. Fulcher, Pallavi Subhraveti, I. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, L. Mueller, Quang Ong, S. Paley, Anuradha Pujar, A. Shearer, Michael Travers, Deepika Weerasinghe, Peifen Zhang, P. Karp (2007)
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome DatabasesNucleic Acids Research, 36
B. Strang, S. Bertics, R. Grummer, L. Armentano (1998)
Effect of long-chain fatty acids on triglyceride accumulation, gluconeogenesis, and ureagenesis in bovine hepatocytes.Journal of dairy science, 81 3
C. Xia, H. Zhang, L. Wu, C. Xu, J. Zheng, Y. Yan, L. Yang, S. Shu (2012)
Proteomic analysis of plasma from cows affected with milk fever using two-dimensional differential in-gel electrophoresis and mass spectrometry.Research in veterinary science, 93 2
B. Desvergne, L. Michalik, W. Wahli (2006)
Transcriptional regulation of metabolism.Physiological reviews, 86 2
B. Mallard, J. Dekkers, M. Ireland, K. Leslie, S. Sharif, C. Vankampen, L. Wagter, B. Wilkie (1998)
Alteration in immune responsiveness during the peripartum period and its ramification on dairy cow and calf health.Journal of dairy science, 81 2
T. Skaar, R. Grummer, M. Dentine, R. Stauffacher (1989)
Seasonal effects of prepartum and postpartum fat and niacin feeding on lactation performance and lipid metabolism.Journal of dairy science, 72 8
M. Bionaz, K. Periasamy, S. Rodriguez-Zas, W. Hurley, J. Loor (2012)
A Novel Dynamic Impact Approach (DIA) for Functional Analysis of Time-Course Omics Studies: Validation Using the Bovine Mammary TranscriptomePLoS ONE, 7
(2003)
Experiments using microarray technology: limitations and standard operating procedures.
H. Dann, J. Drackley (2005)
Carnitine palmitoyltransferase I in liver of periparturient dairy cows: effects of prepartum intake, postpartum induction of ketosis, and periparturient disorders.Journal of dairy science, 88 11
M. Bionaz, J. Loor (2008)
Gene networks driving bovine milk fat synthesis during the lactation cycleBMC Genomics, 9
Natalie Duarte, S. Becker, N. Jamshidi, I. Thiele, Monica Mo, Thuy Vo, R. Srivas, B. Palsson (2007)
Global reconstruction of the human metabolic network based on genomic and bibliomic dataProceedings of the National Academy of Sciences, 104
K. Kimura, J. Goff, M. Kehrli, T. Reinhardt (2002)
Decreased neutrophil function as a cause of retained placenta in dairy cattle.Journal of dairy science, 85 3
X. Chen, Chao Gao, Haijin Li, Lei Huang, Qi Sun, Yanye Dong, Chunlian Tian, Shengpu Gao, Hailin Dong, Danping Guan, Xiaoyun Hu, S. Zhao, Liang Li, Lin Zhu, Qiao Yan, Junfeng Zhang, Ke Zen, Chen-Yu Zhang (2010)
Identification and characterization of microRNAs in raw milk during different periods of lactation, commercial fluid, and powdered milk productsCell Research, 20
R. Baldwin, James France, Margaret Gill (1987)
Metabolism of the lactating cow: I. Animal elements of a mechanistic modelJournal of Dairy Research, 54
P. Wittkopp (2007)
Variable gene expression in eukaryotes: a network perspectiveJournal of Experimental Biology, 210
Y. Wang, S. Puntenney, J. Burton, N. Forsberg (2009)
Use of gene profiling to evaluate the effects of a feed additive on immune function in periparturient dairy cattle.Journal of animal physiology and animal nutrition, 93 1
D. Bauman, W. Currie (1980)
Partitioning of nutrients during pregnancy and lactation: a review of mechanisms involving homeostasis and homeorhesis.Journal of dairy science, 63 9
A. Kümmel, S. Panke, Matthias Heinemann (2006)
Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome dataMolecular Systems Biology, 2
C. Tuggle, F. Towfic, Vasant Honavar (2011)
Introduction to Systems Biology for Animal Scientists
E. Bendixen, M. Danielsen, K. Hollung, E. Gianazza, I. Miller (2011)
Farm animal proteomics--a review.Journal of proteomics, 74 3
T. Tollefsbol (2011)
Advances in epigenetic technology.Methods in molecular biology, 791
Steve Dien, Christophe Schilling (2006)
Bringing metabolomics data into the forefront of systems biologyMolecular Systems Biology, 2
A. Bell (1995)
Regulation of organic nutrient metabolism during transition from late pregnancy to early lactation.Journal of animal science, 73 9
M. Taniguchi, G. Penner, K. Beauchemin, M. Oba, L. Guan (2010)
Comparative analysis of gene expression profiles in ruminal tissue from Holstein dairy cows fed high or low concentrate diets.Comparative biochemistry and physiology. Part D, Genomics & proteomics, 5 4
David Morrow (1976)
Fat cow syndrome.Journal of dairy science, 59 9
A. Roberts, A. Roberts, D. Mclean (2011)
Differential gene expression in anterior pituitary glands from anestrous and cycling postpartum beef cows.Journal of animal science, 89 4
Y. Benjamini, Y. Hochberg (1995)
Controlling the false discovery rate: a practical and powerful approach to multiple testingJournal of the royal statistical society series b-methodological, 57
A. Cornish-Bowden (2005)
Making systems biology work in the 21st centuryGenome Biology, 6
A. Brazma (2009)
Minimum Information About a Microarray Experiment (MIAME) – Successes, Failures, ChallengesThe Scientific World Journal, 9
M. Steele, G. Vandervoort, O. Alzahal, S. Hook, J. Matthews, B. McBride (2011)
Rumen epithelial adaptation to high-grain diets involves the coordinated regulation of genes involved in cholesterol homeostasis.Physiological genomics, 43 6
Monica Mo, B. Palsson, Markus Herrgård (2009)
Connecting extracellular metabolomic measurements to intracellular flux states in yeastBMC Systems Biology, 3
Hongwu Ma, A. Sorokin, A. Mazein, A. Selkov, E. Selkov, O. Demin, I. Goryanin (2007)
The Edinburgh human metabolic network reconstruction and its functional analysisMolecular Systems Biology, 3
P. Piantoni, K. Daniels, R. Everts, S. Rodriguez-Zas, H. Lewin, W. Hurley, R. Akers, J. Loor (2012)
Level of nutrient intake affects mammary gland gene expression profiles in preweaned Holstein heifers.Journal of dairy science, 95 5
K. Singh, S. Davis, J. Dobson, A. Molenaar, T. Wheeler, C. Prosser, V. Farr, K. Oden, K. Swanson, Cooper Phyn, D. Hyndman, T. Wilson, H. Henderson, K. Stelwagen (2008)
cDNA microarray analysis reveals that antioxidant and immune genes are upregulated during involution of the bovine mammary gland.Journal of dairy science, 91 6
A. Kadegowda, M. Bionaz, L. Piperova, R. Erdman, J. Loor (2009)
Peroxisome proliferator-activated receptor-gamma activation and long-chain fatty acids alter lipogenic gene networks in bovine mammary epithelial cells to various extents.Journal of dairy science, 92 9
H. Parkinson, Ugis Sarkans, N. Kolesnikov, Niran Abeygunawardena, Tony Burdett, M. Dylag, Ibrahim Emam, Anna Farne, Emma Hastings, Ele Holloway, N. Kurbatova, M. Lukk, J. Malone, Roby Mani, Ekaterina Pilicheva, G. Rustici, Anjan Sharma, Eleanor Williams, T. Adamusiak, Marco Brandizi, Nataliya Sklyar, A. Brazma (2010)
ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experimentsNucleic Acids Research, 39
K. Singh, A. Molenaar, K. Swanson, B. Gudex, J. Arias, R. Erdman, K. Stelwagen (2011)
Epigenetics: a possible role in acute and transgenerational regulation of dairy cow milk production.Animal : an international journal of animal bioscience, 6 3
Adam Feist, Christopher Henry, Jennifer Reed, Markus Krummenacker, A. Joyce, Peter Karp, L. Broadbelt, V. Hatzimanikatis, B. Palsson (2007)
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic informationMolecular Systems Biology, 3
J. Mcnamara (2012)
Ruminant Nutrition Symposium: a systems approach to integrating genetics, nutrition, and metabolic efficiency in dairy cattle.Journal of animal science, 90 6
H. Westerhoff, B. Palsson (2004)
The evolution of molecular biology into systems biologyNature Biotechnology, 22
N. Litherland, H. Dann, J. Drackley (2011)
Prepartum nutrient intake alters palmitate metabolism by liver slices from peripartal dairy cows.Journal of dairy science, 94 4
R. Everts, Mark Band, Z. Liu, C. Kumar, Lei Liu, Juan Loor, Rosane Oliveira, Harris Lewin (2005)
A 7872 cDNA microarray and its use in bovine functional genomics.Veterinary immunology and immunopathology, 105 3-4
M. Wheeler, E. Monaco, M. Bionaz, Tetsuya Tanaka (2010)
The Role of Existing and Emerging Biotechnologies for Livestock Production: toward holismActa Scientiae Veterinariae, 38
Cynthia Krieger, Peifen Zhang, L. Mueller, Alfred Wang, S. Paley, Martha Arnaud, John Pick, S. Rhee, P. Karp (2004)
MetaCyc: a multiorganism database of metabolic pathways and enzymesNucleic acids research, 32 Database issue
M. Schena, D. Shalon, Ronald Davis, P. Brown (1995)
Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA MicroarrayScience, 270
J. Loor (2010)
Genomics of metabolic adaptations in the peripartal cow.Animal : an international journal of animal bioscience, 4 7
S. Suchyta, S. Sipkovsky, R. Halgren, R. Kruska, M. Elftman, M. Weber-Nielsen, M. VandeHaar, Lan Xiao, R. Tempelman, P. Coussens (2003)
Bovine mammary gene expression profiling using a cDNA microarray enhanced for mammary-specific transcripts.Physiological genomics, 16 1
Madhusudan Goravanahally, M. Salem, J. Yao, E. Inskeep, Jorge Flores (2009)
Differential Gene Expression in the Bovine Corpus Luteum During Transition from Early Phase to Midphase and Its Potential Role in Acquisition of Luteolytic Sensitivity to Prostaglandin F2 Alpha1, 80
Fatih Ozsolak, P. Milos (2011)
RNA sequencing: advances, challenges and opportunitiesNature Reviews Genetics, 12
J. Houdijk, N. Jessop, I. Kyriazakis (2001)
Nutrient partitioning between reproductive and immune functions in animalsProceedings of the Nutrition Society, 60
D. Streyl, R. Kenngott, N. Herbach, R. Wanke, H. Blum, F. Sinowatz, E. Wolf, H. Zerbe, S. Bauersachs (2012)
Gene expression profiling of bovine peripartal placentomes: detection of molecular pathways potentially involved in the release of foetal membranes.Reproduction, 143 1
Xuekun Li, Xinyu Zhao (2008)
Epigenetic regulation of mammalian stem cells.Stem cells and development, 17 6
Chuang Xu, Zhe Wang (2008)
Comparative proteomic analysis of livers from ketotic cowsVeterinary Research Communications, 32
D. Grum, J. Drackley, J. Clark (2002)
Fatty acid metabolism in liver of dairy cows fed supplemental fat and nicotinic acid during an entire lactation.Journal of dairy science, 85 11
E. Connor, Stephen Siferd, T. Elsasser, C. Evock-Clover, C. Tassell, T. Sonstegard, V. Fernandes, A. Capuco (2008)
Effects of increased milking frequency on gene expression in the bovine mammary glandBMC Genomics, 9
M. Bionaz, B. Thering, J. Loor (2011)
Fine metabolic regulation in ruminants via nutrient–gene interactions: saturated long-chain fatty acids increase expression of genes involved in lipid metabolism and immune response partly through PPAR-α activationBritish Journal of Nutrition, 107
K. Kepková, P. Vodička, T. Toralová, M. Lopatářová, S. Čech, R. Doležel, V. Havlicek, U. Besenfelder, A. Kuzmany, M. Sirard, J. Laurinčík, J. Kanka (2011)
Transcriptomic analysis of in vivo and in vitro produced bovine embryos revealed a developmental change in cullin 1 expression during maternal-to-embryonic transition.Theriogenology, 75 9
J. Shin, Robert Li, Yuan Gao, R. Baldwin, Congjun Li (2012)
Genome-wide ChIP-seq mapping and analysis reveal butyrate-induced acetylation of H3K9 and H3K27 correlated with transcription activity in bovine cellsFunctional & Integrative Genomics, 12
J. Mcnamara (1991)
Regulation of adipose tissue metabolism in support of lactation.Journal of dairy science, 74 2
J. Loor, M. Bionaz, G. Invernizzi (2011)
Systems biology and animal nutrition: insights from the dairy cow during growth and the lactation cycle.
Xiaoming Hou, Qing-zhang Li, TianYing Huang (2010)
Microarray analysis of gene expression profiles in the bovine mammary gland during lactationScience China Life Sciences, 53
C. Vigneault, Catherine Gravel, M. Vallée, S. McGraw, M. Sirard (2009)
Unveiling the bovine embryo transcriptome during the maternal-to-embryonic transition.Reproduction, 137 2
Kiera Finucane, T. McFadden, Jeffrey Bond, J. Kennelly, F. Zhao (2008)
Onset of lactation in the bovine mammary gland: gene expression profiling indicates a strong inhibition of gene expression in cell proliferationFunctional & Integrative Genomics, 8
C. Herath, S. Shiojima, H. Ishiwata, S. Katsuma, T. Kadowaki, K. Ushizawa, K. Imai, Toru Takahashi, A. Hirasawa, G. Tsujimoto, K. Hashizume (2004)
Pregnancy-associated changes in genome-wide gene expression profiles in the liver of cow throughout pregnancy.Biochemical and biophysical research communications, 313 3
J. Loor, M. Bionaz, W. Hurley (2011)
Mammary Gland | Gene Networks Controlling Development and Involution
M. Bionaz, J. Loor (2012)
Ruminant Metabolic Systems Biology: Reconstruction and Integration of Transcriptome Dynamics Underlying Functional Responses of Tissues to Nutrition and Physiological StateaGene Regulation and Systems Biology, 6
R. Caspi, P. Karp (2007)
Using the MetaCyc Pathway Database and the BioCyc Database CollectionCurrent Protocols in Bioinformatics, 20
J. Edwards, B. Palsson (1999)
Systems Properties of the Haemophilus influenzaeRd Metabolic Genotype*The Journal of Biological Chemistry, 274
R. Emery, J. Liesman, T. Herdt (1992)
Metabolism of long chain fatty acids by ruminant liver.The Journal of nutrition, 122 3 Suppl
C. Whitfield, A. Czikó, G. Robinson (2003)
Gene Expression Profiles in the Brain Predict Behavior in Individual Honey BeesScience, 302
Arun Kommadath, Han Mulder, A.A.C. Wit, H. Woelders, M. Smits, B. Beerda, R. Veerkamp, A. Frijters, M.F.W. Pas (2010)
Gene expression patterns in anterior pituitary associated with quantitative measure of oestrous behaviour in dairy cows.Animal : an international journal of animal bioscience, 4 8
Z. Oltvai, A. Barabási (2002)
Life's Complexity PyramidScience, 298
M. Bionaz, W. Hurley, J. Loor (2012)
Milk Protein Synthesis in the Lactating Mammary Gland: Insights from Transcriptomics Analyses
J. Drackley (1999)
ADSA Foundation Scholar Award. Biology of dairy cows during the transition period: the final frontier?Journal of dairy science, 82 11
J. Loor, R. Everts, M. Bionaz, H. Dann, D. Morin, Rosane Oliveira, S. Rodriguez-Zas, J. Drackley, H. Lewin (2007)
Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows.Physiological genomics, 32 1
G. Liu (2011)
Recent applications of DNA sequencing technologies in food, nutrition and agriculture.Recent patents on food, nutrition & agriculture, 3 3
B. Beerda, J. Wyszyńska-Koko, M. Pas, A. Wit, R. Veerkamp (2008)
Expression profiles of genes regulating dairy cow fertility: recent findings, ongoing activities and future possibilities.Animal : an international journal of animal bioscience, 2 8
R. Tempelman (2005)
Assessing statistical precision, power, and robustness of alternative experimental designs for two color microarray platforms based on mixed effects models.Veterinary immunology and immunopathology, 105 3-4
P. Piantoni, M. Bionaz, D. Graugnard, K. Daniels, R. Everts, S. Rodriguez-Zas, H. Lewin, Hurley Hurley, Michael Akers, J. Loor (2010)
Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during developmentBMC Genomics, 11
J. Loor, H. Dann, R. Everts, Rosane Oliveira, C. Green, N. Guretzky, S. Rodriguez-Zas, H. Lewin, J. Drackley (2005)
Temporal gene expression profiling of liver from periparturient dairy cows reveals complex adaptive mechanisms in hepatic function.Physiological genomics, 23 2
Zhong Wang, M. Gerstein, M. Snyder (2009)
RNA-Seq: a revolutionary tool for transcriptomicsNature Reviews Genetics, 10
Robert Li, A. Capuco (2008)
Canonical pathways and networks regulated by estrogen in the bovine mammary glandFunctional & Integrative Genomics, 8
S. Madsen, Ling-Chu Chang, M. Hickey, G. Rosa, P. Coussens, J. Burton (2004)
Microarray analysis of gene expression in blood neutrophils of parturient cows.Physiological genomics, 16 2
B. Kleppe, R. Aiello, R. Grummer, L. Armentano (1988)
Triglyceride accumulation and very low density lipoprotein secretion by rat and goat hepatocytes in vitro.Journal of dairy science, 71 7
J. Burton, S. Madsen, J. Yao, S. Sipkovsky, P. Coussens (2003)
An Immunogenomics Approach to Understanding Periparturient Immunosuppression and Mastitis Susceptibility in Dairy Cows*Acta Veterinaria Scandinavica, 44
R. Baldwin, J. France, D. Beever, M. Gill, J. Thornley (1987)
Metabolism of the lactating cow: III. Properties of mechanistic models suitable for evaluation of energetic relationships and factors involved in the partition of nutrientsJournal of Dairy Research, 54
S. Mandard, Michael Müller, S. Kersten (2004)
Peroxisome proliferator-activated receptor α target genesCellular and Molecular Life Sciences CMLS, 61
W. Jin, J. Grant, P. Stothard, S. Moore, L. Guan (2009)
Characterization of bovine miRNAs by sequencing and bioinformatics analysisBMC Molecular Biology, 10
R. Grummer (1993)
Etiology of lipid-related metabolic disorders in periparturient dairy cows.Journal of dairy science, 76 12
D. Pullen, D. Palmquist, R. Emery (1989)
Effect on days of lactation and methionine hydroxy analog on incorporation of plasma fatty acids into plasma triglycerides.Journal of dairy science, 72 1
N. Mansouri-Attia, J. Aubert, P. Reinaud, L. Galio, R. Everts, X. Yang, X. Tian, H. Lewin, J. Renard, O. Sandra, N. Mansouri-Attia, Aubert J, Reinaud Giraud-Delville, Galio L, Everts Re, Degrelle S, Richard C, Hue I, Yang X, Tian Xc, Lewin Ha, Renard Jp, Sandra Gene (2009)
Gene expression profiles of bovine caruncular and intercaruncular endometrium at implantation.Physiological genomics, 39 1
T. Overton, J. Drackley, C. Ottemann-Abbamonte, A. Beaulieu, L. Emmert, J. Clark (1999)
Substrate utilization for hepatic gluconeogenesis is altered by increased glucose demand in ruminants.Journal of animal science, 77 7
Chunmei Guan, Chao Ye, Xiaomei Yang, Jiangang Gao (2010)
A review of current large‐scale mouse knockout effortsgenesis, 48
J. Reese, J. Reese, C. Childers, Jaideep Sundaram, C. Dickens, K. Childs, K. Childs, Donald Vile, C. Elsik, C. Elsik (2010)
Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genomeBMC Genomics, 11
R. Greenfield, M. Cecava, S. Donkin (2000)
Changes in mRNA expression for gluconeogenic enzymes in liver of dairy cattle during the transition to lactation.Journal of dairy science, 83 6
F. Bruggeman, H. Westerhoff (2007)
The nature of systems biology.Trends in microbiology, 15 1
M. Bionaz, J. Loor (2007)
Identification of reference genes for quantitative real-time PCR in the bovine mammary gland during the lactation cycle.Physiological genomics, 29 3
F. Strozzi, R. Mazza, R. Malinverni, J. Williams (2009)
Annotation of 390 bovine miRNA genes by sequence similarity with other species.Animal genetics, 40 1
J. Loor, H. Dann, N. Guretzky, R. Everts, Rosane Oliveira, C. Green, N. Litherland, S. Rodriguez-Zas, H. Lewin, J. Drackley (2006)
Plane of nutrition prepartum alters hepatic gene expression and function in dairy cows as assessed by longitudinal transcript and metabolic profiling.Physiological genomics, 27 1
Ronald Horst, Jesse Goff, T. Reinhardt, D. Buxton (1997)
Strategies for preventing milk fever in dairy cattle.Journal of dairy science, 80 7
P. Andersen, N. Jarløv., M. Hesselholt, L. Baek (1996)
Studies on in vivo endotoxin plasma disappearance times in cattle.Zentralblatt fur Veterinarmedizin. Reihe A, 43 2
Alan Bell, W. Burhans, T. Overton (2000)
Protein nutrition in late pregnancy, maternal protein reserves and lactation performance in dairy cowsProceedings of the Nutrition Society, 59
J. Drackley, H. Dann, N. Douglas, N. Guretzky, N. Litherland, J. Underwood, J. Loor (2005)
Physiological and pathological adaptations in dairy cows that may increase susceptibility to periparturient diseases and disordersItalian Journal of Animal Science, 4
M. Bionaz, K. Periasamy, S. Rodriguez-Zas, R. Everts, H. Lewin, W. Hurley, J. Loor (2012)
Old and New Stories: Revelations from Functional Analysis of the Bovine Mammary Transcriptome during the Lactation CyclePLoS ONE, 7
W. Busa, R. Gimlich (1989)
Lithium-induced teratogenesis in frog embryos prevented by a polyphosphoinositide cycle intermediate or a diacylglycerol analog.Developmental biology, 132 2
J. Goff, R. Horst (1997)
Physiological changes at parturition and their relationship to metabolic disorders.Journal of dairy science, 80 7
S. Seo, H. Lewin (2009)
Reconstruction of metabolic pathways for the cattle genomeBMC Systems Biology, 3
T. Herdt, J. Liesman, B. Gerloff, R. Emery (1983)
Reduction of serum triacylglycerol-rich lipoprotein concentrations in cows with hepatic lipidosis.American journal of veterinary research, 44 2
K. Radrich, Yoshimasa Tsuruoka, P. Dobson, A. Gevorgyan, Neil Swainston, Gino Baart, J. Schwartz (2010)
Integration of metabolic databases for the reconstruction of genome-scale metabolic networksBMC Systems Biology, 4
Microarray development changed the way biologists approach the holistic study of cells and tissues. In dairy cattle biosciences, the application of omics technology, from spotted microarrays to next-generation sequencing and proteomics, has grown steadily during the past 10 years. Omics has found application in fields such as dairy cattle nutritional physiology, reproduction, and immunology. Generating biologically meaningful data from omics studies relies on bioinformatics tools. Both are key components of the systems physiology toolbox, which allows study of the interactions between a condition (e.g., nutrition, physiological state) with tissue gene/protein expression and the associated changes in biological functions. The nature of physiologic and metabolic adaptations in dairy cattle at any stage of the life cycle is multifaceted, involves multiple tissues, and is dynamic, e.g., the transition from late-pregnancy to lactation. Application of integrative systems physiology in periparturient dairy cattle has already advanced knowledge of the simultaneous functional adaptations in liver, adipose, and mammary tissue.
Annual Review of Animal Biosciences – Annual Reviews
Published: Jan 1, 2013
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