-
A.
Sud,
B.
Kinnersley,
R.
Houlston
(2017)
Genome-wide association studies of cancer: current insights and future perspectives
Nature Reviews Cancer, 17
-
M.
Ghoussaini,
O.
Fletcher,
K.
Michailidou,
C.
Turnbull,
M.
Schmidt,
E.
Dicks,
J.
Dennis,
Qin
Wang,
Manjeet
Humphreys,
C.
Luccarini,
C.
Baynes,
Don
Conroy,
M.
Maranian,
Shahana
Ahmed,
K.
Driver,
N.
Johnson,
N.
Orr,
I.
Silva,
Q.
Waisfisz,
H.
Meijers-Heijboer,
A.
Uitterlinden,
F.
Rivadeneira,
P.
Hall,
K.
Czene,
A.
Irwanto,
Jianjun
Liu,
H.
Nevanlinna,
K.
Aittomäki,
C.
Blomqvist,
A.
Meindl,
R.
Schmutzler,
B.
Müller-Myhsok,
P.
Lichtner,
J.
Chang-Claude,
R.
Hein,
S.
Nickels,
D.
Flesch-Janys,
H.
Tsimiklis,
E.
Makalic,
D.
Schmidt,
M.
Bui,
J.
Hopper,
C.
Apicella,
Daniel
Park,
M.
Southey,
D.
Hunter,
S.
Chanock,
A.
Broeks,
S.
Verhoef,
F.
Hogervorst,
P.
Fasching,
M.
Lux,
M.
Beckmann,
A.
Ekici,
E.
Sawyer,
I.
Tomlinson,
M.
Kerin,
F.
Marmé,
A.
Schneeweiss,
C.
Sohn,
B.
Burwinkel,
P.
Guénel,
Thérèse
Truong,
E.
Cordina-Duverger,
F.
Menegaux,
S.
Bojesen,
B.
Nordestgaard,
S.
Nielsen,
H.
Flyger,
R.
Milne,
M.
Alonso,
A.
González-Neira,
J.
Benítez,
H.
Anton-Culver,
A.
Ziogas,
L.
Bernstein,
C.
Dur,
H.
Brenner,
Heiko
Müller,
V.
Arndt,
C.
Stegmaier,
C.
Justenhoven,
H.
Brauch,
T.
Brüning,
S.
Wang-gohrke,
U.
Eilber,
T.
Dörk,
P.
Schürmann,
M.
Bremer,
P.
Hillemanns,
N.
Bogdanova,
N.
Antonenkova,
Y.
Rogov,
J.
Karstens,
M.
Bermisheva,
D.
Prokofieva,
E.
Khusnutdinova,
A.
Lindblom,
S.
Margolin,
A.
Mannermaa,
V.
Kataja,
V.
Kosma,
J.
Hartikainen,
D.
Lambrechts,
B.
Yesilyurt,
G.
Floris,
K.
Leunen,
S.
Manoukian,
B.
Bonanni,
Stefano
Fortuzzi,
P.
Peterlongo,
F.
Couch,
Xianshu
Wang,
Kristen
Stevens,
Adam
Lee,
G.
Giles,
L.
Baglietto,
G.
Severi,
C.
Mclean,
G.
Alnæs,
V.
Kristensen,
Anne-Lise
Børrensen-Dale,
E.
John,
A.
Miron,
R.
Winqvist,
K.
Pylkäs,
A.
Jukkola-Vuorinen,
S.
Kauppila,
I.
Andrulis,
G.
Glendon,
A.
Mulligan,
P.
Devilee,
C.
Asperen,
R.
Tollenaar,
C.
Seynaeve,
J.
Figueroa,
M.
García-Closas,
L.
Brinton,
J.
Lissowska,
M.
Hooning,
A.
Hollestelle,
R.
Oldenburg,
A.
Ouweland,
A.
Cox,
M.
Reed,
M.
Shah,
A.
Jakubowska,
J.
Lubiński,
Katarzyna
Jaworska,
K.
Durda,
Michael
Jones,
M.
Schoemaker,
A.
Ashworth,
A.
Swerdlow,
J.
Beesley,
Xiaoqing
Chen,
K.
Muir,
A.
Lophatananon,
Suthee
Rattanamongkongul,
Arkom
Chaiwerawattana,
D.
Kang,
K.
Yoo,
D.
Noh,
Chen-Yang
Shen,
Jyh‐cherng
Yu,
Pei‐Ei
Wu,
Chia-Ni
Hsiung,
A.
Perkins,
R.
Swann,
L.
Velentzis,
D.
Eccles,
W.
Tapper,
S.
Gerty,
Nikki
Graham,
B.
Ponder,
G.
Chenevix-Trench,
P.
Pharoah,
M.
Lathrop,
A.
Dunning,
N.
Rahman,
J.
Peto,
D.
Easton
(2012)
Genome-wide association analysis identifies three new breast cancer susceptibility loci
Nature genetics, 44
-
Clare
Bycroft,
C.
Freeman,
D.
Petkova,
G.
Band,
L.
Elliott,
K.
Sharp,
A.
Motyer,
Damjan
Vukcevic,
O.
Delaneau,
Jared
O'Connell,
A.
Cortes,
S.
Welsh,
A.
Young,
Mark
Effingham,
G.
McVean,
S.
Leslie,
N.
Allen,
P.
Donnelly,
J.
Marchini
(2018)
The UK Biobank resource with deep phenotyping and genomic data
Nature, 562
-
Huwenbo
Shi,
Gleb
Kichaev,
B.
Pasaniuc
(2016)
Contrasting the genetic architecture of 30 complex traits from summary association data
bioRxiv
-
Viola
Fanfani,
M.
Zátopková,
A.
Harris,
F.
Pezzella,
Giovanni
Stracquadanio
(2020)
Dissecting the heritable risk of breast cancer: from statistical methods to susceptibility genes.
Seminars in cancer biology
-
J.
Salvatier,
Thomas
Wiecki,
C.
Fonnesbeck
(2016)
Probabilistic programming in Python using PyMC3
PeerJ Prepr., 4
-
R.
Wooster,
G.
Bignell,
J.
Lancaster,
S.
Swift,
S.
Seal,
J.
Mangion,
N.
Collins,
S.
Gregory,
C.
Gumbs,
Gos
Michlem,
R.
Barfoot,
R.
Hamoudi,
Sandeep
Patel,
C.
Rice,
P.
Biggs,
Yasmin
Hashim,
Amanda
Smith,
F.
Connor,
A.
Arason,
J.
Gudmundsson,
D.
Ficenec,
D.
Kelsell,
D.
Ford,
P.
Tonin,
D.
Bishop,
N.
Spurr,
B.
Ponder,
R.
Eeles,
J.
Peto,
P.
Devilee,
C.
Cornelisse,
H.
Lynch,
S.
Narod,
G.
Lenoir,
V.
Egilsson,
Rosa
Barkadottir,
D.
Easton,
D.
Bentley,
P.
Futreal,
A.
Ashworth,
M.
Stratton
(1996)
Identification of the breast cancer susceptibility gene BRCA2
Nature, 379
-
E.
Boyle,
Yang
Li,
J.
Pritchard
(2017)
An Expanded View of Complex Traits: From Polygenic to Omnigenic
Cell, 169
-
(2011)
DNA polymerases and cancer. Nature reviews cancer
-
D.
Malkin,
F.
Li,
L.
Strong,
J.
Fraumeni,
C.
Nelson,
D.
Kim,
J.
Kassel,
M.
Gryka,
F.
Bischoff,
M.
Tainsky
(1990)
Germ line p53 mutations in a familial syndrome of breast cancer, sarcomas, and other neoplasms.
Science, 250 4985
-
T.
Qing,
Hussein
Mohsen,
M.
Marczyk,
Yixuan
Ye,
Tess
O’Meara,
Hongyu
Zhao,
J.
Townsend,
M.
Gerstein,
C.
Hatzis,
Y.
Kluger,
L.
Pusztai
(2020)
Germline variant burden in cancer genes correlates with age at diagnosis and somatic mutation burden
Nature Communications, 11
-
Zhaoming
Wang,
K.
McGlynn,
E.
Meyts,
D.
Bishop,
Charles
Chung,
M.
Dalgaard,
M.
Greene,
Ramneek
Gupta,
T.
Grotmol,
T.
Haugen,
R.
Karlsson,
K.
Litchfield,
N.
Mitra,
Kasper
Nielsen,
L.
Pyle,
S.
Schwartz,
V.
Thorsson,
S.
Vardhanabhuti,
F.
Wiklund,
Clare
Turnbull,
S.
Chanock,
P.
Kanetsky,
Kathrine
Nathanson,
Katherine
Grotm,
Clare
Turnbull,
Kathrine
Nathanson,
A.
Ferlin,
J.
Gietema,
V.
Cortessis,
R.
Hauser,
M.
Hildebrandt,
L.
Kiemeney,
C.
Kubisch,
D.
Lessel,
T.
Rafnar,
L.
Richiardi,
R.
Skotheim,
T.
Zheng
(2017)
Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor
Nature genetics, 49
-
C.
Stuelten,
C.
Parent,
D.
Montell
(2018)
Cell motility in cancer invasion and metastasis: insights from simple model organisms
Nature Reviews Cancer, 18
-
Yong
Zhang,
Yuping
Zhang,
K.
Sun,
Ziyi
Meng,
Ligong
Chen
(2018)
The SLC transporter in nutrient and metabolic sensing, regulation, and drug development
Journal of Molecular Cell Biology, 11
-
(2017)
Genomewide association analysis implicates dysregulation of immunity genes in chronic lymphocytic leukaemia
-
A.
Vosoughi,
Tuo
Zhang,
K.
Shohdy,
P.
Vlachostergios,
D.
Wilkes,
B.
Bhinder,
S.
Tagawa,
D.
Nanus,
A.
Molina,
H.
Beltran,
C.
Sternberg,
Samaneh
Motanagh,
B.
Robinson,
J.
Xiang,
Xiao
Fan,
W.
Chung,
M.
Rubin,
O.
Elemento,
A.
Sboner,
J.
Mosquera,
B.
Faltas
(2020)
Common germline-somatic variant interactions in advanced urothelial cancer
Nature Communications, 11
-
(2019)
Germline and somatic genetic variants in the p53 pathway interact to affect cancer risk, progression and drug response. bioRxiv Cold Spring Harbor Laboratory
-
Jian
Yang,
S.
Lee,
M.
Goddard,
P.
Visscher
(2011)
GCTA: a tool for genome-wide complex trait analysis.
American journal of human genetics, 88 1
-
P.
Visscher,
N.
Wray,
Qian
Zhang,
P.
Sklar,
M.
McCarthy,
M.
Brown,
Jian
Yang
(2017)
10 Years of GWAS Discovery: Biology, Function, and Translation.
American journal of human genetics, 101 1
-
Ping
Zhang,
I.
Kitchen-Smith,
Lingyun
Xiong,
Giovanni
Stracquadanio,
Katherine
Brown,
P.
Richter,
Marsha
Wallace,
E.
Bond,
N.
Sahgal,
S.
Moore,
S.
Nornes,
S.
Val,
Mirvat
Surakhy,
David
Sims,
Xuting
Wang,
D.
Bell,
Jorge
Zeron-Medina,
Yanyan
Jiang,
A.
Ryan,
J.
Selfe,
J.
Shipley,
S.
Kar,
P.
Pharoah,
C.
Loveday,
R.
Jansen,
L.
Grochola,
C.
Palles,
A.
Protheroe,
V.
Millar,
D.
Ebner,
M.
Pagadala,
S.
Blagden,
T.
Maughan,
E.
Domingo,
I.
Tomlinson,
C.
Turnbull,
H.
Carter,
G.
Bond
(2019)
Germline and somatic genetic variants in the p53 pathway interact to affect cancer risk, progression and drug response
bioRxiv
-
Y.
Shao,
G.
Wood,
Jinchang
Lu,
Qing-Lian
Tang,
Jonathan
Liu,
Sam
Molyneux,
Yan
Chen,
Hui
Fang,
H.
Adissu,
T.
McKee,
P.
Waterhouse,
R.
Khokha
(2018)
Cross-species genomics identifies DLG2 as a tumor suppressor in osteosarcoma
Oncogene, 38
-
(2013)
Cancer genome landscapes. science. American Association for the Advancement of Science; 2013;339:1546–58
-
Genome-wide association study identi fi es susceptibility loci for B-cell childhood acute lymphoblastic leukemia
-
(2013)
Cancer genome landscapes. science
-
Dan
Chen,
T.
Cui,
W.
Ek,
Han
Liu,
Huibo
Wang,
U.
Gyllensten
(2015)
Analysis of the genetic architecture of susceptibility to cervical cancer indicates that common SNPs explain a large proportion of the heritability.
Carcinogenesis, 36 9
-
A.
Vosoughi,
T.
Zhang,
KS.
Shohdy,
PJ.
Vlachostergios,
DC.
Wilkes,
B.
Bhinder
(2020)
Common germline-somatic variant interactions in advanced urothelial cancer
Nat Commun, 11
-
Xia
Jiang,
H.
Finucane,
F.
Schumacher,
Stephanie
Schmit,
J.
Tyrer,
Younghun
Han,
K.
Michailidou,
C.
Lesseur,
K.
Kuchenbaecker,
J.
Dennis,
D.
Conti,
G.
Casey,
M.
Gaudet,
J.
Huyghe,
D.
Albanes,
M.
Aldrich,
A.
Andrew,
I.
Andrulis,
H.
Anton-Culver,
A.
Antoniou,
N.
Antonenkova,
S.
Arnold,
K.
Aronson,
B.
Arun,
E.
Bandera,
R.
Barkardottir,
D.
Barnes,
J.
Batra,
M.
Beckmann,
J.
Benítez,
S.
Benlloch,
A.
Berchuck,
S.
Berndt,
H.
Bickeböller,
Stephanie
Bien,
C.
Blomqvist,
S.
Boccia,
N.
Bogdanova,
S.
Bojesen,
M.
Bolla,
H.
Brauch,
H.
Brenner,
J.
Brenton,
M.
Brook,
J.
Brunet,
H.
Brunnström,
D.
Buchanan,
B.
Burwinkel,
R.
Butzow,
G.
Cadoni,
T.
Caldés,
M.
Caligo,
I.
Campbell,
P.
Campbell,
G.
Cancel-Tassin,
L.
Cannon-Albright,
D.
Campa,
Neil
Caporaso,
A.
Carvalho,
A.
Chan,
J.
Chang-Claude,
S.
Chanock,
Chu
Chen,
D.
Christiani,
K.
Claes,
F.
Claessens,
Judith
Clements,
J.
Collée,
Marcia
Correa,
F.
Couch,
A.
Cox,
J.
Cunningham,
C.
Cybulski,
K.
Czene,
M.
Daly,
A.
deFazio,
P.
Devilee,
O.
Díez,
M.
Gago-Domínguez,
J.
Donovan,
T.
Dörk,
E.
Duell,
A.
Dunning,
M.
Dwek,
D.
Eccles,
C.
Edlund,
D.
Edwards,
Carolina
Ellberg,
D.
Evans,
P.
Fasching,
R.
Ferris,
T.
Liloglou,
J.
Figueiredo,
O.
Fletcher,
R.
Fortner,
F.
Fostira,
S.
Franceschi,
E.
Friedman,
S.
Gallinger,
P.
Ganz,
J.
Garber,
J.
García-Saenz,
S.
Gayther,
G.
Giles,
A.
Godwin,
M.
Goldberg,
D.
Goldgar,
E.
Goode,
M.
Goodman,
G.
Goodman,
K.
Grankvist,
M.
Greene,
H.
Gronberg,
J.
Gronwald,
P.
Guénel,
N.
Håkansson,
P.
Hall,
U.
Hamann,
F.
Hamdy,
R.
Hamilton,
J.
Hampe,
A.
Haugen,
F.
Heitz,
R.
Herrero,
P.
Hillemanns,
M.
Hoffmeister,
E.
Høgdall,
Yun-Chul
Hong,
J.
Hopper,
R.
Houlston,
P.
Hulick,
D.
Hunter,
D.
Huntsman,
G.
Idos,
E.
Imyanitov,
S.
Ingles,
C.
Isaacs,
A.
Jakubowska,
P.
James,
M.
Jenkins,
M.
Johansson,
Mikael
Johansson,
E.
John,
A.
Joshi,
R.
Kaneva,
B.
Karlan,
L.
Kelemen,
T.
Kühl,
K.
Khaw,
E.
Khusnutdinova,
A.
Kibel,
L.
Kiemeney,
Jeri
Kim,
S.
Kjaer,
J.
Knight,
M.
Kogevinas,
Z.
Kote-Jarai,
Stella
Koutros,
V.
Kristensen,
J.
Kupryjańczyk,
M.
Lacko,
S.
Lam,
D.
Lambrechts,
M.
Landi,
P.
Lazarus,
N.
Le,
Eunjung
Lee,
F.
Lejbkowicz,
H.
Lenz,
Goska
Leslie,
D.
Lessel,
J.
Lester,
D.
Levine,
Li
Li,
Christopher
Li,
A.
Lindblom,
N.
Lindor,
Geoffrey
Liu,
F.
Loupakis,
J.
Lubiński,
L.
Maehle,
C.
Maier,
A.
Mannermaa,
L.
Marchand,
S.
Margolin,
T.
May,
L.
McGuffog,
A.
Meindl,
Pooja
Middha,
Austin
Miller,
R.
Milne,
R.
MacInnis,
F.
Modugno,
M.
Montagna,
V.
Moreno,
K.
Moysich,
L.
Mucci,
K.
Muir,
A.
Mulligan,
K.
Nathanson,
D.
Neal,
A.
Ness,
S.
Neuhausen,
H.
Nevanlinna,
P.
Newcomb,
Lisa
Newcomb,
F.
Nielsen,
L.
Nikitina-Zake,
B.
Nordestgaard,
R.
Nussbaum,
K.
Offit,
E.
Oláh,
A.
Olama,
O.
Olopade,
A.
Olshan,
Hampus
Olsson,
A.
Osorio,
H.
Pandha,
Jong
Park,
N.
Pashayan,
M.
Parsons,
T.
Pejovic,
K.
Penney,
W.
Peters,
C.
Phelan,
A.
Phipps,
D.
Plaseska‐Karanfilska,
M.
Pring,
D.
Prokofyeva,
P.
Radice,
K.
Stefánsson,
S.
Ramus,
L.
Raskin,
G.
Rennert,
H.
Rennert,
E.
Rensburg,
Marjorie
Riggan,
H.
Risch,
A.
Risch,
M.
Roobol,
B.
Rosenstein,
M.
Rossing,
K.
Ruyck,
E.
Saloustros,
D.
Sandler,
E.
Sawyer,
M.
Schabath,
J.
Schleutker,
M.
Schmidt,
V.
Setiawan,
Hong-Chen
Shen,
E.
Siegel,
W.
Sieh,
C.
Singer,
M.
Slattery,
K.
Sørensen,
M.
Southey,
A.
Spurdle,
J.
Stanford,
V.
Stevens,
S.
Stintzing,
J.
Stone,
K.
Sundfeldt,
R.
Sutphen,
A.
Swerdlow,
E.
Tajara,
C.
Tangen,
A.
Tardón,
Jack
Taylor,
M.
Teare,
M.
Teixeira,
M.
Terry,
K.
Terry,
S.
Thibodeau,
M.
Thomassen,
L.
Bjørge,
M.
Tischkowitz,
A.
Toland,
Diana
Torres,
P.
Townsend,
R.
Travis,
N.
Tung,
S.
Tworoger,
C.
Ulrich,
N.
Usmani,
C.
Vachon,
E.
Nieuwenhuysen,
Ana
Vega,
Miguel
Aguado-Barrera,
Qin
Wang,
P.
Webb,
C.
Weinberg,
S.
Weinstein,
M.
Weissler,
J.
Weitzel,
C.
West,
E.
White,
A.
Whittemore,
H.
Wichmann,
F.
Wiklund,
R.
Winqvist,
A.
Wolk,
P.
Woll,
M.
Woods,
A.
Wu,
Xifeng
Wu,
D.
Yannoukakos,
W.
Zheng,
S.
Zienolddiny,
A.
Ziogas,
K.
Zorn,
J.
Lane,
R.
Saxena,
Duncan
Thomas,
R.
Hung,
B.
Diergaarde,
J.
Mckay,
U.
Peters,
L.
Hsu,
M.
García-Closas,
R.
Eeles,
G.
Chenevix-Trench,
P.
Brennan,
C.
Haiman,
J.
Simard,
D.
Easton,
S.
Gruber,
P.
Pharoah,
A.
Price,
B.
Pasaniuc,
Chris
Amos,
P.
Kraft,
S.
Lindström
(2018)
Shared heritability and functional enrichment across six solid cancers
Nature Communications, 10
-
Giovanni
Stracquadanio,
Xuting
Wang,
Marsha
Wallace,
A.
Grawenda,
Ping
Zhang,
J.
Hewitt,
Jorge
Zeron-Medina,
F.
Castro-Giner,
I.
Tomlinson,
C.
Goding,
Kamil
Cygan,
W.
Fairbrother,
Laurent
Thomas,
P.
Sætrom,
F.
Gemignani,
S.
Landi,
Benjamin
Schuster-Böckler,
D.
Bell,
G.
Bond
(2016)
The importance of p53 pathway genetics in inherited and somatic cancer genomes
Nature Reviews Cancer, 16
-
B.
Pasaniuc,
A.
Price
(2016)
Dissecting the genetics of complex traits using summary association statistics
Nature Reviews Genetics, 18
-
P.
Campbell,
G.
Getz,
Joshua
Stuart,
J.
Korbel,
Lincoln
Stein,
Icgc
(2020)
Pan-cancer analysis of whole genomes
Nature, 578
-
J.
Sampson,
W.
Wheeler,
M.
Yeager,
O.
Panagiotou,
Zhaoming
Wang,
S.
Berndt,
Q.
Lan,
C.
Abnet,
L.
Amundadottir,
J.
Figueroa,
M.
Landi,
L.
Mirabello,
S.
Savage,
P.
Taylor,
I.
Vivo,
K.
McGlynn,
M.
Purdue,
P.
Rajaraman,
H.
Adami,
A.
Ahlbom,
D.
Albanes,
M.
Amary,
S.
An,
U.
Andersson,
G.
Andriole,
I.
Andrulis,
E.
Angelucci,
S.
Ansell,
C.
Arici,
B.
Armstrong,
A.
Arslan,
M.
Austin,
D.
Baris,
D.
Barkauskas,
B.
Bassig,
N.
Becker,
Y.
Benavente,
S.
Benhamou,
C.
Berg,
D.
Berg,
L.
Bernstein,
K.
Bertrand,
B.
Birmann,
A.
Black,
H.
Boeing,
P.
Boffetta,
M.
Boutron‐Ruault,
P.
Bracci,
L.
Brinton,
A.
Brooks-Wilson,
H.
Bueno-de-Mesquita,
L.
Burdett,
J.
Buring,
M.
Butler,
Q.
Cai,
G.
Cancel-Tassin,
F.
Canzian,
A.
Carrato,
T.
Carreón,
A.
Carta,
J.
Chan,
E.
Chang,
G.
Chang,
I.
Chang,
Jiang
Chang,
J.
Chang-Claude,
Chien-Jen
Chen,
Chih-Yi
Chen,
Chu
Chen,
Chung-Hsing
Chen,
Constance
Chen,
Hongyan
Chen,
Ke
Chen,
Kuan-Yu
Chen,
Kun-Chieh
Chen,
Ying
Chen,
Ying-Hsiang
Chen,
Yi-Song
Chen,
Yuh-Min
Chen,
L.
Chien,
M.
Chirlaque,
J.
Choi,
Y.
Choi,
W.
Chow,
Charles
Chung,
J.
Clavel,
F.
Clavel-Chapelon,
P.
Cocco,
J.
Colt,
E.
Compérat,
L.
Conde,
J.
Connors,
D.
Conti,
V.
Cortessis,
M.
Cotterchio,
W.
Cozen,
S.
Crouch,
M.
Crous-Bou,
O.
Cussenot,
F.
Davis,
T.
Ding,
W.
Diver,
M.
Dorronsoro,
L.
Dossus,
E.
Duell,
M.
Ennas,
R.
Erickson,
M.
Feychting,
A.
Flanagan,
L.
Foretova,
J.
Fraumeni,
N.
Freedman,
L.
Freeman,
C.
Fuchs,
M.
Gago-Domínguez,
S.
Gallinger,
Yu-tang
Gao,
S.
Gapstur,
M.
García-Closas,
R.
Garcı́a-Closas,
R.
Gascoyne,
J.
Gastier-Foster,
M.
Gaudet,
J.
Gaziano,
C.
Giffen,
G.
Giles,
E.
Giovannucci,
B.
Glimelius,
M.
Goggins,
N.
Gokgoz,
A.
Goldstein,
R.
Gorlick,
M.
Gross,
R.
Grubb,
J.
Gu,
P.
Guan,
M.
Gunter,
Huan
Guo,
T.
Habermann,
C.
Haiman,
D.
Halai,
G.
Hallmans,
Manal
Hassan,
C.
Hattinger,
Qincheng
He,
Xingzhou
He,
K.
Helzlsouer,
B.
Henderson,
R.
Henriksson,
H.
Hjalgrim,
Judith
Hoffman-Bolton,
Chancellor
Hohensee,
T.
Holford,
E.
Holly,
Yun-Chul
Hong,
R.
Hoover,
P.
Horn‐Ross,
G.
Hosain,
H.
Hosgood,
C.
Hsiao,
N.
Hu,
Wei
Hu,
Zhibin
Hu,
Ming-Shyan
Huang,
J.
Huerta,
J.
Hung,
A.
Hutchinson,
P.
Inskip,
R.
Jackson,
E.
Jacobs,
M.
Jenab,
H.
Jeon,
B.
Ji,
G.
Jin,
Li
Jin,
C.
Johansen,
Alison
Johnson,
Y.
Jung,
R.
Kaaks,
A.
Kamineni,
E.
Kane,
C.
Kang,
M.
Karagas,
R.
Kelly,
K.
Khaw,
Christopher
Kim,
H.
Kim,
J.
Kim,
Jun
Kim,
Yeul-Hong
Kim,
Y.
Kim,
Young-Chul
Kim,
C.
Kitahara,
A.
Klein,
R.
Klein,
M.
Kogevinas,
T.
Kohno,
L.
Kolonel,
C.
Kooperberg,
A.
Kricker,
V.
Krogh,
H.
Kunitoh,
R.
Kurtz,
S.
Kweon,
A.
LaCroix,
Charles
Lawrence,
F.
Lecanda,
V.
Lee,
Donghui
Li,
Haixin
Li,
Jihua
Li,
Yao-Jen
Li,
Yuqing
Li,
L.
Liao,
M.
Liebow,
T.
Lightfoot,
W.
Lim,
Chien-Chung
Lin,
D.
Lin,
S.
Lindstrom,
M.
Linet,
B.
Link,
Chenwei
Liu,
Jianjun
Liu,
Li
Liu,
B.
Ljungberg,
J.
Lloreta,
S.
Lollo,
D.
Lu,
E.
Lund,
N.
Malats,
S.
Mannisto,
L.
Marchand,
N.
Marina,
G.
Masala,
G.
Mastrangelo,
K.
Matsuo,
M.
Maynadie,
J.
Mckay,
R.
Mckean-Cowdin,
M.
Melbye,
B.
Melin,
D.
Michaud,
T.
Mitsudomi,
A.
Monnereau,
Rebecca
Montalvan,
L.
Moore,
L.
Mortensen,
A.
Nieters,
K.
North,
A.
Novak,
A.
Oberg,
K.
Offit,
I.
Oh,
S.
Olson,
D.
Palli,
W.
Pao,
I.
Park,
J.
Park,
K.
Park,
A.
Patiño-García,
S.
Pavanello,
P.
Peeters,
R.
Perng,
U.
Peters,
G.
Petersen,
P.
Picci,
M.
Pike,
S.
Porru,
J.
Prescott,
L.
Prokunina-Olsson,
B.
Qian,
Y.
Qiao,
M.
Rais,
E.
Riboli,
J.
Riby,
H.
Risch,
C.
Rizzato,
R.
Rodabough,
E.
Roman,
M.
Rouprêt,
A.
Ruder,
S.
Sanjosé,
G.
Scelo,
A.
Schned,
F.
Schumacher,
K.
Schwartz,
M.
Schwenn,
K.
Scotlandi,
A.
Seow,
C.
Serra,
M.
Serra,
H.
Sesso,
V.
Setiawan,
G.
Severi,
R.
Severson,
T.
Shanafelt,
Hongbing
Shen,
W.
Shen,
M.
Shin,
K.
Shiraishi,
X.
Shu,
A.
Siddiq,
L.
Sierrasesúmaga,
A.
Sihoe,
C.
Skibola,
Alex
Smith,
Martyn
Smith,
M.
Southey,
J.
Spinelli,
A.
Staines,
M.
Stampfer,
Marianna
Stern,
V.
Stevens,
Rachael
Stolzenberg-Solomon,
J.
Su,
W.
Su,
M.
Sund,
J.
Sung,
S.
Sung,
W.
Tan,
Wei
Tang,
A.
Tardón,
David
Thomas,
C.
Thompson,
L.
Tinker,
R.
Tirabosco,
A.
Tjønneland,
R.
Travis,
D.
Trichopoulos,
Fang‐Yu
Tsai,
Y.
Tsai,
M.
Tucker,
J.
Turner,
C.
Vajdic,
R.
Vermeulen,
D.
Villano,
P.
Vineis,
J.
Virtamo,
K.
Visvanathan,
J.
Wactawski‐Wende,
Chaoyu
Wang,
Chih-Liang
Wang,
Jiu-cun
Wang,
Junwen
Wang,
F.
Wei,
E.
Weiderpass,
G.
Weiner,
S.
Weinstein,
N.
Wentzensen,
E.
White,
T.
Witzig,
B.
Wolpin,
M.
Wong,
Chen
Wu,
Guoping
Wu,
Junjie
Wu,
Tangchun
Wu,
Wei
Wu,
Xifeng
Wu,
Yi-long
Wu,
J.
Wunder,
Y.
Xiang,
Jun
Xu,
P.
Xu,
Pan‐Chyr
Yang,
Tsung-Ying
Yang,
Y.
Ye,
Zhihua
Yin,
J.
Yokota,
H.
Yoon,
Chong-Jen
Yu,
Herbert
Yu,
Kai
Yu,
Jian-Min
Yuan,
A.
Zelenetz,
A.
Zeleniuch‐Jacquotte,
Xuchao
Zhang,
Yawei
Zhang,
Xueying
Zhao,
Zhenhong
Zhao,
Hong
Zheng,
T.
Zheng,
W.
Zheng,
Baosen
Zhou,
M.
Zhu,
M.
Zucca,
S.
Boca,
J.
Cerhan,
G.
Ferri,
P.
Hartge,
C.
Hsiung,
C.
Magnani,
L.
Miligi,
L.
Morton,
K.
Smedby,
Lauren
Teras,
J.
Vijai,
Sophia
Wang,
P.
Brennan,
N.
Caporaso,
D.
Hunter,
P.
Kraft,
N.
Rothman,
D.
Silverman,
S.
Slager,
S.
Chanock,
N.
Chatterjee
(2015)
Analysis of Heritability and Shared Heritability Based on Genome-Wide Association Studies for Thirteen Cancer Types.
Journal of the National Cancer Institute, 107 12
-
Donavan
Cheng,
Talia
Mitchell,
A.
Zehir,
Ronak
Shah,
R.
Benayed,
Aijazuddin
Syed,
Raghu
Chandramohan,
Zhen
Liu,
H.
Won,
Sasinya
Scott,
A.
Brannon,
Catherine
O'Reilly,
Justyna
Sadowska,
J.
Casanova,
Angela
Yannes,
J.
Hechtman,
Jinjuan
Yao,
Wei
Song,
D.
Ross,
Alifya
Oultache,
S.
Dogan,
L.
Borsu,
M.
Hameed,
K.
Nafa,
M.
Arcila,
M.
Ladanyi,
Mike
Berger
(2015)
Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT): A Hybridization Capture-Based Next-Generation Sequencing Clinical Assay for Solid Tumor Molecular Oncology.
The Journal of molecular diagnostics : JMD, 17 3
-
T.
Manolio,
F.
Collins,
N.
Cox,
D.
Goldstein,
L.
Hindorff,
D.
Hunter,
M.
McCarthy,
E.
Ramos,
L.
Cardon,
A.
Chakravarti,
Judy
Cho,
A.
Guttmacher,
A.
Kong,
L.
Kruglyak,
E.
Mardis,
C.
Rotimi,
M.
Slatkin,
David
Valle,
A.
Whittemore,
M.
Boehnke,
A.
Clark,
E.
Eichler,
G.
Gibson,
J.
Haines,
T.
Mackay,
S.
Mccarroll,
P.
Visscher
(2009)
Finding the missing heritability of complex diseases
Nature, 461
-
R.
Eeles,
A.
Olama,
S.
Benlloch,
E.
Saunders,
D.
Leongamornlert,
M.
Tymrakiewicz,
M.
Ghoussaini,
C.
Luccarini,
J.
Dennis,
S.
Jugurnauth-Little,
Tokhir
Dadaev,
D.
Neal,
F.
Hamdy,
J.
Donovan,
K.
Muir,
G.
Giles,
G.
Severi,
F.
Wiklund,
H.
Gronberg,
C.
Haiman,
F.
Schumacher,
B.
Henderson,
L.
Marchand,
S.
Lindstrom,
P.
Kraft,
D.
Hunter,
S.
Gapstur,
S.
Chanock,
S.
Berndt,
D.
Albanes,
G.
Andriole,
J.
Schleutker,
Maren
Weischer,
F.
Canzian,
E.
Riboli,
T.
Key,
R.
Travis,
D.
Campa,
S.
Ingles,
E.
John,
R.
Hayes,
P.
Pharoah,
N.
Pashayan,
K.
Khaw,
J.
Stanford,
E.
Ostrander,
L.
Signorello,
S.
Thibodeau,
D.
Schaid,
C.
Maier,
W.
Vogel,
A.
Kibel,
C.
Cybulski,
J.
Lubiński,
L.
Cannon-Albright,
H.
Brenner,
Jong
Park,
R.
Kaneva,
J.
Batra,
A.
Spurdle,
J.
Clements,
M.
Teixeira,
E.
Dicks,
Andrew
Lee,
A.
Dunning,
C.
Baynes,
D.
Conroy,
M.
Maranian,
Shahana
Ahmed,
K.
Govindasami,
M.
Guy,
R.
Wilkinson,
E.
Sawyer,
A.
Morgan,
D.
Dearnaley,
A.
Horwich,
R.
Huddart,
V.
Khoo,
C.
Parker,
N.
As,
C.
Woodhouse,
A.
Thompson,
T.
Dudderidge,
C.
Ogden,
C.
Cooper,
A.
Lophatananon,
A.
Cox,
M.
Southey,
J.
Hopper,
D.
English,
M.
Aly,
J.
Adolfsson,
Jiangfeng
Xu,
S.
Zheng,
M.
Yeager,
R.
Kaaks,
W.
Diver,
M.
Gaudet,
M.
Stern,
Román
Corral,
A.
Joshi,
Ahva
Shahabi,
Tiina
Wahlfors,
T.
Tammela,
A.
Auvinen,
J.
Virtamo,
P.
Klarskov,
B.
Nordestgaard,
M.
Røder,
S.
Nielsen,
S.
Bojesen,
A.
Siddiq,
L.
FitzGerald,
S.
Kolb,
E.
Kwon,
D.
Karyadi,
W.
Blot,
W.
Zheng,
Q.
Cai,
S.
McDonnell,
A.
Rinckleb,
B.
Drake,
G.
Colditz,
D.
Wokołorczyk,
R.
Stephenson,
C.
Teerlink,
H.
Muller,
D.
Rothenbacher,
T.
Sellers,
Hui-Yi
Lin,
C.
Slavov,
V.
Mitev,
F.
Lose,
Srilakshmi
Srinivasan,
S.
Maia,
P.
Paulo,
E.
Lange,
K.
Cooney,
A.
Antoniou,
Daniel
Vincent,
F.
Bacot,
D.
Tessier,
Z.
Kote-Jarai,
D.
Easton
(2013)
Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array
Nature Genetics, 45
-
Esther
Rheinbay,
M.
Nielsen,
F.
Abascal,
J.
Wala,
Ofer
Shapira,
G.
Tiao,
H.
Hornshøj,
J.
Hess,
R.
Juul,
Ziao
Lin,
L.
Feuerbach,
R.
Sabarinathan,
Tobias
Madsen,
Jaegil
Kim,
L.
Mularoni,
S.
Shuai,
Andrés
Lanzós,
C.
Herrmann,
Y.
Maruvka,
Ciyue
Shen,
S.
Amin,
P.
Bandopadhayay,
Johanna
Bertl,
Keith
Boroevich,
John
Busanovich,
Joana
Carlevaro-Fita,
D.
Chakravarty,
Calvin
Chan,
D.
Craft,
P.
Dhingra,
K.
Diamanti,
Nuno
Fonseca,
A.
Gonzalez-Perez,
Qianyun
Guo,
M.
Hamilton,
N.
Haradhvala,
Chen
Hong,
Keren
Isaev,
Todd
Johnson,
Malene
Juul,
A.
Kahles,
A.
Kahraman,
Youngwook
Kim,
J.
Komorowski,
K.
Kumar,
Sushant
Kumar,
Donghoon
Lee,
K.
Lehmann,
Yilong
Li,
E.
Liu,
L.
Lochovsky,
Keunchil
Park,
O.
Pich,
Nicola
Roberts,
G.
Saksena,
S.
Schumacher,
N.
Sidiropoulos,
L.
Sieverling,
Nasa
Sinnott-Armstrong,
C.
Stewart,
D.
Tamborero,
J.
Tubío,
Husen
Umer,
Liis
Uusküla-Reimand,
C.
Wadelius,
Lina
Wadi,
Xiaotong
Yao,
Cheng-Zhong
Zhang,
Jing
Zhang,
J.
Haber,
A.
Hobolth,
M.
Imieliński,
Manolis
Kellis,
M.
Lawrence,
C.
Mering,
H.
Nakagawa,
Benjamin
Raphael,
M.
Rubin,
C.
Sander,
Lincoln
Stein,
Joshua
Stuart,
T.
Tsunoda,
D.
Wheeler,
Rory
Johnson,
J.
Reimand,
M.
Gerstein,
Ekta
Khurana,
P.
Campbell,
N.
López-Bigas,
Federico
Beroukh,
Gary
Bader,
J.
Barenboim,
R.
Beroukhim,
S.
Brunak,
Ken
Chen,
J.
Choi,
Jordi
Deu-Pons,
J.
Fink,
J.
Frigola,
C.
Gambacorti-Passerini,
D.
Garsed,
G.
Getz,
I.
Gut,
D.
Haan,
A.
Harmanci,
M.
Helmy,
Ermin
Hodzic,
J.
Izarzugaza,
J.
Kim,
J.
Korbel,
E.
Larsson,
Shantao
Li,
Xiaotong
Li,
S.
Lou,
K.
Marchal,
I.
Martincorena,
Alexander
Martínez-Fundichely,
Patrick
McGillivray,
W.
Meyerson,
F.
Muiños,
M.
Paczkowska,
Kiejung
Park,
J.
Pedersen,
T.
Pons,
Sergio
Pulido-Tamayo,
I.
Reyes-Salazar,
M.
Reyna,
C.
Rubio-Perez,
S.
Sahinalp,
L.
Salichos,
M.
Shackleton,
Raunak
Shrestha,
A.
Valencia,
M.
Vázquez,
L.
Verbeke,
Jiayin
Wang,
J.
Warrell,
S.
Waszak,
J.
Weischenfeldt,
Guanming
Wu,
Jun
Yu,
Xuanping
Zhang,
Yan
Zhang,
Zhongming
Zhao,
L.
Zou,
Kadir
Bowt,
K.
Akdemir,
Eva
Álvarez,
Adrian
Baez-Ortega,
P.
Boutros,
D.
Bowtell,
B.
Brors,
K.
Burns,
Kin
Chan,
I.
Cortés-Ciriano,
Ana
Dueso-Barroso,
Andrew
Dunford,
P.
Edwards,
X.
Estivill,
D.
Etemadmoghadam,
M.
Frenkel-Morgenstern,
D.
Gordenin,
B.
Hutter,
David
Jones,
Y.
Ju,
M.
Kazanov,
L.
Klimczak,
Y.
Koh,
E.
Lee,
J.
Lee,
A.
Lynch,
G.
Macintyre,
F.
Markowetz,
M.
Meyerson,
S.
Miyano,
Fábio
Navarro,
S.
Ossowski,
P.
Park,
J.
Pearson,
Montserrat
Puiggrós,
K.
Rippe,
S.
Roberts,
Bernardo
Rodriguez-Martin,
R.
Scully,
D.
Torrents,
I.
Villasante,
N.
Waddell,
Lixing
Yang,
S.
Yoon,
J.
Zamora,
J.
Weischenfeldt,
R.
Beroukhim,
I.
Martincorena,
J.
Pedersen,
G.
Getz
(2020)
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
Nature, 578
-
P.
Visscher,
W.
Hill,
N.
Wray
(2008)
Heritability in the genomics era — concepts and misconceptions
Nature Reviews Genetics, 9
-
Sabine
Lange,
K.
Takata,
R.
Wood
(2011)
DNA polymerases and cancer
Nature Reviews Cancer, 11
-
A.
Schork,
W.
Thompson,
Phillip
Pham,
Phillip
Pham,
A.
Torkamani,
A.
Torkamani,
J.
Roddey,
P.
Sullivan,
J.
Kelsoe,
M.
O’Donovan,
H.
Furberg,
N.
Schork,
N.
Schork,
N.
Schork,
O.
Andreassen,
A.
Dale
(2013)
All SNPs Are Not Created Equal: Genome-Wide Association Studies Reveal a Consistent Pattern of Enrichment among Functionally Annotated SNPs
PLoS Genetics, 9
-
H.
Shi,
G.
Kichaev,
B.
Pasaniuc
(2016)
Contrasting the genetic architecture of 30 complex traits from summary association data
Am J Hum Genet, 99
-
Amy
Kennedy,
U.
Ozbek,
M.
Dorak
(2017)
What has GWAS done for HLA and disease associations?
International Journal of Immunogenetics, 44
-
Y.
Miki,
J.
Swensen,
D.
Shattuck-Eidens,
P.
Futreal,
K.
Harshman,
S.
Tavtigian,
Qingyun
Liu,
C.
Cochran,
L.
Bennett,
W.
Ding,
R.
Bell,
J.
Rosenthal,
C.
Hussey,
Thanh
Tran,
M.
Mcclure,
C.
Frye,
T.
Hattier,
R.
Phelps,
A.
Haugen-Strano,
H.
Katcher,
Kazuko
Yakumo,
Z.
Gholami,
Daniel
Shaffer,
S.
Stone,
Steven
Bayer,
Christian
Wray,
R.
Bogden,
P.
Dayananth,
J.
Ward,
P.
Tonin,
S.
Narod,
Pamela
Bristow,
F.
Norris,
L.
Helvering,
P.
Morrison,
P.
Rosteck,
Mei
Lai,
J.
Barrett,
C.
Lewis,
S.
Neuhausen,
L.
Cannon-Albright,
D.
Goldgar,
R.
Wiseman,
A.
Kamb,
M.
Skolnick
(1994)
A strong candidate for the breast and ovarian cancer susceptibility gene BRCA1.
Science, 266 5182
-
H.
Finucane,
Yakir
Reshef,
V.
Anttila,
Kamil
Slowikowski,
A.
Gusev,
Andrea
Byrnes,
S.
Gazal,
Po-ru
Loh,
C.
Lareau,
N.
Shoresh,
G.
Genovese,
Arpiar
Saunders,
Evan
Macosko,
Samuela
Pollack,
J.
Perry,
Jason
Buenrostro,
B.
Bernstein,
S.
Raychaudhuri,
S.
Mccarroll,
B.
Neale,
A.
Price
(2017)
Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types
Nature genetics, 50
-
H.
Finucane,
B.
Bulik-Sullivan,
A.
Gusev,
G.
Trynka,
Yakir
Reshef,
Po-ru
Loh,
V.
Anttila,
Han
Xu,
C.
Zang,
K.
Farh,
S.
Ripke,
F.
Day,
S.
Purcell,
E.
Stahl,
S.
Lindstrom,
J.
Perry,
Y.
Okada,
S.
Raychaudhuri,
M.
Daly,
N.
Patterson,
B.
Neale,
A.
Price
(2015)
Partitioning heritability by functional annotation using genome-wide association summary statistics
Nature genetics, 47
-
H.
Hayashi,
T.
Arao,
Y.
Togashi,
Hiroaki
Kato,
Y.
Fujita,
M.
Velasco,
Hideharu
Kimura,
Kazuko
Matsumoto,
Kaoru
Tanaka,
I.
Okamoto,
Akihiko
Ito,
Y.
Yamada,
Kazuhiko
Nakagawa,
K.
Nishio
(2013)
The OCT4 pseudogene POU5F1B is amplified and promotes an aggressive phenotype in gastric cancer
Oncogene, 34
-
A.
Knudson
(1971)
Mutation and cancer: statistical study of retinoblastoma.
Proceedings of the National Academy of Sciences of the United States of America, 68 4
-
D.
Chakravarty,
Jianjiong
Gao,
Sarah
Phillips,
Ritika
Kundra,
Hongxin
Zhang,
Jiaojiao
Wang,
J.
Rudolph,
R.
Yaeger,
Tara
Soumerai,
Moriah
Nissan,
Matthew
Chang,
S.
Chandarlapaty,
T.
Traina,
P.
Paik,
A.
Ho,
F.
Hantash,
A.
Grupe,
S.
Baxi,
M.
Callahan,
A.
Snyder,
P.
Chi,
D.
Danila,
M.
Gounder,
J.
Harding,
M.
Hellmann,
G.
Iyer,
Y.
Janjigian,
T.
Kaley,
D.
Levine,
M.
Lowery,
A.
Omuro,
M.
Postow,
D.
Rathkopf,
A.
Shoushtari,
N.
Shukla,
M.
Voss,
Ederlinda
Paraiso,
A.
Zehir,
M.
Berger,
B.
Taylor,
L.
Saltz,
Gregory
Riely,
M.
Ladanyi,
D.
Hyman,
J.
Baselga,
P.
Sabbatini,
D.
Solit,
N.
Schultz
(2017)
OncoKB: A Precision Oncology Knowledge Base.
JCO precision oncology, 2017
-
J.
Salvatier,
TV.
Wiecki,
C.
Fonnesbeck
(2016)
Probabilistic programming in python using PyMC3
PeerJ Computer Science, 2
-
T.
Rafnar,
P.
Sulem,
S.
Stacey,
F.
Geller,
J.
Gudmundsson,
A.
Sigurdsson,
Margret
Jakobsdottir,
Hafdis
Helgadottir,
S.
Thorlacius,
K.
Aben,
T.
Blondal,
T.
Thorgeirsson,
G.
Thorleifsson,
K.
Kristjánsson,
K.
Thorisdottir,
R.
Ragnarsson,
B.
Sigurgeirsson,
H.
Skuladottir,
T.
Gudbjartsson,
H.
Isaksson,
G.
Einarsson,
K.
Benediktsdottir,
B.
Agnarsson,
K.
Olafsson,
A.
Salvarsdottir,
Hjordis
Bjarnason,
Margret
Asgeirsdottir,
Kari
Kristinsson,
Sigurborg
Matthiasdottir,
S.
Sveinsdottir,
S.
Polidoro,
V.
Höiom,
R.
Botella-Estrada,
K.
Hemminki,
P.
Rudnai,
D.
Bishop,
M.
Campagna,
E.
Kellen,
M.
Zeegers,
M.
Zeegers,
P.
Verdier,
A.
Ferrer,
D.
Isla,
M.
Vidal,
R.
Andrés,
B.
Saez,
P.
Juberías,
J.
Banzo,
Sebastian
Navarrete,
A.
Trés,
Donghui
Kan,
A.
Lindblom,
E.
Gurzău,
K.
Koppová,
F.
Vegt,
J.
Schalken,
H.
Heijden,
H.
Smit,
R.
Termeer,
E.
Oosterwijk,
O.
Hooij,
E.
Nagore,
S.
Porru,
G.
Steineck,
G.
Steineck,
J.
Hansson,
F.
Buntinx,
F.
Buntinx,
W.
Catalona,
G.
Matullo,
P.
Vineis,
A.
Kiltie,
J.
Mayordomo,
Rajiv
Kumar,
L.
Kiemeney,
M.
Frigge,
T.
Jónsson,
H.
Saemundsson,
R.
Barkardottir,
E.
Jonsson,
S.
Jonsson,
J.
Ólafsson,
J.
Gulcher,
G.
Másson,
D.
Gudbjartsson,
A.
Kong,
U.
Thorsteinsdóttir,
U.
Thorsteinsdóttir,
K.
Stefánsson,
K.
Stefánsson
(2009)
Sequence variants at the TERT-CLPTM1L locus associate with many cancer types
Nature Genetics, 41
-
Matthew
Bailey,
Collin
Tokheim,
E.
Porta-Pardo,
Sohini
Sengupta,
D.
Bertrand,
A.
Weerasinghe,
A.
Colaprico,
M.
Wendl,
Jaegil
Kim,
B.
Reardon,
P.
Ng,
K.
Jeong,
Song
Cao,
Zixing
Wang,
Jianjiong
Gao,
Qingsong
Gao,
F.
Wang,
E.
Liu,
L.
Mularoni,
C.
Rubio-Perez,
N.
Nagarajan,
I.
Cortés-Ciriano,
D.
Zhou,
Wen-Wei
Liang,
J.
Hess,
V.
Yellapantula,
D.
Tamborero,
A.
Gonzalez-Perez,
Chayaporn
Suphavilai,
J.
Ko,
Ekta
Khurana,
P.
Park,
E.
Allen,
Han
Liang,
M.
Lawrence,
A.
Godzik,
N.
López-Bigas,
Josh
Stuart,
D.
Wheeler,
G.
Getz,
Ken
Chen,
A.
Lazar,
G.
Mills,
R.
Karchin,
L.
Ding
(2018)
Comprehensive Characterization of Cancer Driver Genes and Mutations (vol 173, 371.e1, 2018)
Cell, 174
-
Y.
Sapkota
(2014)
Germline DNA Variations in Breast Cancer Predisposition and Prognosis: A Systematic Review of the Literature
Cytogenetic and Genome Research, 144
-
K.
Litchfield,
Hauke
Thomsen,
J.
Mitchell,
J.
Sundquist,
R.
Houlston,
K.
Hemminki,
C.
Turnbull
(2015)
Quantifying the heritability of testicular germ cell tumour using both population-based and genomic approaches
Scientific Reports, 5
-
F.
Bray,
J.
Ferlay,
I.
Soerjomataram,
R.
Siegel,
Lindsey
Torre,
A.
Jemal
(2018)
Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries
CA: A Cancer Journal for Clinicians, 68
-
Nicholas
Mancuso,
N.
Rohland,
K.
Rand,
Arti
Tandon,
Alexander
Allen,
Dominique
Quinque,
Swapan
Mallick,
Heng
Li,
Alexander
Stram,
Xin
Sheng,
Z.
Kote-Jarai,
D.
Easton,
R.
Eeles,
L.
Marchand,
Alex
Lubwama,
D.
Stram,
S.
Watya,
D.
Conti,
B.
Henderson,
C.
Haiman,
B.
Pasaniuc,
D.
Reich
(2015)
The contribution of rare variation to prostate cancer heritability
Nature Genetics, 48
-
B.
Vogelstein,
N.
Papadopoulos,
V.
Velculescu,
Shibin
Zhou,
L.
Diaz,
K.
Kinzler
(2013)
Cancer Genome Landscapes
Science, 339
-
B.
Bulik-Sullivan,
Po-ru
Loh,
H.
Finucane,
S.
Ripke,
Jian
Yang,
N.
Patterson,
M.
Daly,
A.
Price,
B.
Neale
(2014)
LD Score regression distinguishes confounding from polygenicity in genome-wide association studies
Nature Genetics, 47
-
D.
Hanahan,
R.
Weinberg
(2011)
Hallmarks of Cancer: The Next Generation
Cell, 144
-
Matthew
Bailey,
Collin
Tokheim,
E.
Porta-Pardo,
Sohini
Sengupta,
D.
Bertrand,
A.
Weerasinghe,
A.
Colaprico,
M.
Wendl,
Jaegil
Kim,
B.
Reardon,
P.
Ng,
K.
Jeong,
Song
Cao,
Zixing
Wang,
Jianjiong
Gao,
Qingsong
Gao,
Fang-fang
Wang,
E.
Liu,
L.
Mularoni,
C.
Rubio-Perez,
N.
Nagarajan,
I.
Cortés-Ciriano,
D.
Zhou,
Wen-Wei
Liang,
J.
Hess,
V.
Yellapantula,
D.
Tamborero,
A.
Gonzalez-Perez,
Chayaporn
Suphavilai,
J.
Ko,
Ekta
Khurana,
P.
Park,
E.
Allen,
Han
Liang,
M.
Lawrence,
A.
Godzik,
N.
López-Bigas,
Josh
Stuart,
D.
Wheeler,
G.
Getz,
Ken
Chen,
A.
Lazar,
G.
Mills,
R.
Karchin,
L.
Ding,
Samantha
Caesar-Johnson,
John
Demchok,
Ina
Felau,
M.
Kasapi,
M.
Ferguson,
C.
Hutter,
H.
Sofia,
R.
Tarnuzzer,
Zhining
Wang,
Liming
Yang,
J.
Zenklusen,
J.
Zhang,
Sudha
Chudamani,
Jia
Liu,
Laxmi
Lolla,
R.
Naresh,
T.
Pihl,
Qiang
Sun,
Yunhu
Wan,
Ye
Wu,
Juok
Cho,
T.
DeFreitas,
S.
Frazer,
N.
Gehlenborg,
David
Heiman,
Pei
Lin,
S.
Meier,
M.
Noble,
G.
Saksena,
Douglas
Voet,
Hailei
Zhang,
Brady
Bernard,
N.
Chambwe,
Varsha
Dhankani,
T.
Knijnenburg,
R.
Kramer,
Kalle
Leinonen,
Yuexin
Liu,
Michael
Miller,
Sheila
Reynolds,
I.
Shmulevich,
V.
Thorsson,
Wei
Zhang,
R.
Akbani,
B.
Broom,
A.
Hegde,
Z.
Ju,
R.
Kanchi,
Anil
Korkut,
Jun
Li,
Shiyun
Ling,
Wenbin
Liu,
Yiling
Lu,
Kwok-Shing
Ng,
A.
Rao,
Michael
Ryan,
Jing
Wang,
J.
Weinstein,
Jiexin
Zhang,
Adam
Abeshouse,
J.
Armenia,
D.
Chakravarty,
Walid
Chatila,
I.
Bruijn,
Benjamin
Gross,
Zachary
Heins,
Ritika
Kundra,
Konnor
La,
M.
Ladanyi,
Augustin
Luna,
Moriah
Nissan,
Angelica
Ochoa,
Sarah
Phillips,
E.
Reznik,
F.
Sánchez-Vega,
C.
Sander,
N.
Schultz,
R.
Sheridan,
S.
Sumer,
Yichao
Sun,
B.
Taylor,
Jioajiao
Wang,
Hongxin
Zhang,
Pavana
Anur,
Myron
Peto,
P.
Spellman,
C.
Benz,
Joshua
Stuart,
Christopher
Wong,
C.
Yau,
D.
Hayes,
J.
Parker,
M.
Wilkerson,
Adrian
Ally,
M.
Balasundaram,
R.
Bowlby,
Denise
Brooks,
R.
Carlsen,
E.
Chuah,
Noreen
Dhalla,
Robert
Holt,
Steven
Jones,
K.
Kasaian,
Darlene
Lee,
Yussanne
Ma,
M.
Marra,
Michael
Mayo,
Richard
Moore,
A.
Mungall,
K.
Mungall,
A.
Robertson,
S.
Sadeghi,
J.
Schein,
Payal
Sipahimalani,
Angela
Tam,
N.
Thiessen,
Kane
Tse,
Tina
Wong,
Ashton
Berger,
R.
Beroukhim,
A.
Cherniack,
C.
Cibulskis,
S.
Gabriel,
G.
Gao,
G.
Ha,
M.
Meyerson,
S.
Schumacher,
J.
Shih,
M.
Kucherlapati,
R.
Kucherlapati,
Stephen
Baylin,
L.
Cope,
Ludmila
Danilova,
M.
Bootwalla,
Phillip
Lai,
D.
Maglinte,
D.
Berg,
D.
Weisenberger,
J.
Auman,
S.
Balu,
T.
Bodenheimer,
C.
Fan,
K.
Hoadley,
A.
Hoyle,
S.
Jefferys,
Corbin
Jones,
S.
Meng,
P.
Mieczkowski,
Lisle
Mose,
Amy
Perou,
C.
Perou,
J.
Roach,
Yan
Shi,
J.
Simons,
Tara
Skelly,
Matthew
Soloway,
Donghui
Tan,
Umadevi
Veluvolu,
Huihui
Fan,
T.
Hinoue,
P.
Laird,
Hui
Shen,
Wanding
Zhou,
Michelle
Bellair,
K.
Chang,
K.
Covington,
C.
Creighton,
H.
Dinh,
H.
Doddapaneni,
L.
Donehower,
J.
Drummond,
R.
Gibbs,
R.
Glenn,
Walker
Hale,
Yi
Han,
Jianhong
Hu,
V.
Korchina,
Sandy
Lee,
L.
Lewis,
Wei
Li,
Xiuping
Liu,
M.
Morgan,
Donna
Morton,
D.
Muzny,
J.
Santibanez,
Margi
Sheth,
E.
Shinbrot,
Linghua
Wang,
Min
Wang,
D.
Wheeler,
Liu
Xi,
Fengmei
Zhao,
J.
Hess,
Elizabeth
Appelbaum,
Matthew
Bailey,
M.
Cordes,
C.
Fronick,
L.
Fulton,
R.
Fulton,
C.
Kandoth,
E.
Mardis,
M.
McLellan,
Christopher
Miller,
Heather
Schmidt,
R.
Wilson,
D.
Crain,
Erin
Curley,
J.
Gardner,
Kevin
Lau,
D.
Mallery,
S.
Morris,
J.
Paulauskis,
R.
Penny,
C.
Shelton,
T.
Shelton,
M.
Sherman,
E.
Thompson,
P.
Yena,
Jay
Bowen,
J.
Gastier-Foster,
M.
Gerken,
K.
Leraas,
T.
Lichtenberg,
N.
Ramirez,
L.
Wise,
E.
Zmuda,
N.
Corcoran,
T.
Costello,
C.
Hovens,
A.
Carvalho,
A.
Carvalho,
José
Fregnani,
A.
Longatto-Filho,
R.
Reis,
C.
Scapulatempo-Neto,
H.
Silveira,
D.
Vidal,
Andrew
Burnette,
J.
Eschbacher,
Beth
Hermes,
Ardene
Noss,
Rosy
Singh,
Matthew
Anderson,
Patricia
Castro,
M.
Ittmann,
D.
Huntsman,
B.
Kohl,
X.
Le,
Richard
Thorp,
C.
Andry,
Elizabeth
Duffy,
V.
Lyadov,
O.
Paklina,
G.
Setdikova,
A.
Shabunin,
M.
Tavobilov,
C.
McPherson,
R.
Warnick,
R.
Berkowitz,
Daniel
Cramer,
C.
Feltmate,
N.
Horowitz,
A.
Kibel,
M.
Muto,
C.
Raut,
A.
Malykh,
J.
Barnholtz-Sloan,
Wendi
Barrett,
K.
Devine,
J.
Fulop,
Q.
Ostrom,
K.
Shimmel,
Yingli
Wolinsky,
A.
Sloan,
A.
Rose,
F.
Giuliante,
M.
Goodman,
B.
Karlan,
C.
Hagedorn,
J.
Eckman,
Jodi
Harr,
J.
Myers,
Kelinda
Tucker,
L.
Zach,
B.
Deyarmin,
Hai
Hu,
L.
Kvecher,
C.
Larson,
R.
Mural,
S.
Somiari,
A.
Vicha,
T.
Zelinka,
Joseph
Bennett,
M.
Iacocca,
B.
Rabeno,
P.
Swanson,
M.
Latour,
L.
Lacombe,
B.
Têtu,
A.
Bergeron,
Mary
McGraw,
S.
Staugaitis,
J.
Chabot,
H.
Hibshoosh,
Antonia
Sepulveda,
Tao
Su,
Timothy
Wang,
O.
Potapova,
Olga
Voronina,
L.
Desjardins,
O.
Mariani,
S.
Roman-Roman,
X.
Sastre,
M.
Stern,
F.
Cheng,
S.
Signoretti,
A.
Berchuck,
D.
Bigner,
E.
Lipp,
J.
Marks,
S.
McCall,
R.
McLendon,
A.
Secord,
A.
Sharp,
M.
Behera,
D.
Brat,
Amy
Chen,
K.
Delman,
S.
Force,
F.
Khuri,
K.
Magliocca,
S.
Maithel,
J.
Olson,
T.
Owonikoko,
A.
Pickens,
S.
Ramalingam,
Dong-Myung
Shin,
G.
Sica,
Erwin
Meir,
Hongzhen
Zhang,
Wil
Eijckenboom,
A.
Gillis,
E.
Korpershoek,
L.
Looijenga,
W.
Oosterhuis,
H.
Stoop,
K.
Kessel,
E.
Zwarthoff,
C.
Calatozzolo,
L.
Cuppini,
S.
Cuzzubbo,
F.
DiMeco,
G.
Finocchiaro,
L.
Mattei,
A.
Perin,
B.
Pollo,
Chu
Chen,
J.
Houck,
Pawadee
Lohavanichbutr,
A.
Hartmann,
C.
Stoehr,
R.
Stoehr,
H.
Taubert,
S.
Wach,
B.
Wullich,
W.
Kycler,
D.
Murawa,
M.
Wiznerowicz,
K.
Chung,
W.
Edenfield,
Julie
Martin,
E.
Baudin,
G.
Bubley,
R.
Bueno,
A.
Rienzo,
W.
Richards,
S.
Kalkanis,
T.
Mikkelsen,
H.
Noushmehr,
L.
Scarpace,
N.
Girard,
M.
Aymerich,
E.
Campo,
E.
Giné,
A.
Guillermo,
N.
Bang,
Phan
Hanh,
Bui
Phu,
Yufang
Tang,
H.
Colman,
K.
Evason,
P.
Dottino,
J.
Martignetti,
H.
Gabra,
H.
Juhl,
Teniola
Akeredolu,
Serghei
Stepa,
D.
Hoon,
Keun-Young
Ahn,
K.
Kang,
F.
Beuschlein,
A.
Breggia,
M.
Birrer,
D.
Bell,
M.
Borad,
A.
Bryce,
Erik
Castle,
V.
Chandan,
J.
Cheville,
J.
Copland,
M.
Farnell,
T.
Flotte,
N.
Giama,
T.
Ho,
Michael
Kendrick,
J.
Kocher,
Karla
Kopp,
C.
Moser,
D.
Nagorney,
D.
O'Brien,
B.
O'neill,
T.
Patel,
G.
Petersen,
F.
Que,
M.
Rivera,
L.
Roberts,
R.
Smallridge,
T.
Smyrk,
M.
Stanton,
R.
Thompson,
M.
Torbenson,
J.
Yang,
Lizhi
Zhang,
F.
Brimo,
J.
Ajani,
Ana
Gonzalez,
C.
Behrens,
J.
Bondaruk,
R.
Broaddus,
B.
Czerniak,
B.
Esmaeli,
J.
Fujimoto,
J.
Gershenwald,
C.
Guo,
Christopher
Logothetis,
F.
Meric-Bernstam,
C.
Moran,
L.
Ramondetta,
D.
Rice,
A.
Sood,
P.
Tamboli,
T.
Thompson,
P.
Troncoso,
A.
Tsao,
I.
Wistuba
(2018)
Comprehensive Characterization of Cancer Driver Genes and Mutations
Cell, 174